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The map label for this gene is pbrR2 [H]

Identifier: 94311240

GI number: 94311240

Start: 2522734

End: 2523132

Strand: Reverse

Name: pbrR2 [H]

Synonym: Rmet_2302

Alternate gene names: 94311240

Gene position: 2523132-2522734 (Counterclockwise)

Preceding gene: 94311250

Following gene: 94311238

Centisome position: 64.23

GC content: 60.15

Gene sequence:

>399_bases
ATGATGCGGATCGGTGAACTGGGCAAGAAGGCAGATTGCTTGGTGCAGACCGTGCGCTTTTACGAGTCAGAAGGCTTGCT
GCCCGAGCCTGCACGTAGCGAGGGCAACTTCAGGCTCTATGACGAAGTCCATTTGCAGCGCTTGCTGTTCATCCGCCGCT
GCCGGGCGAAGGACATGACGCTGGATGAGATCCGTCAACTGCTGAACTTACGGGATCGGCCAGAGTTGGGCTGCGGCGAG
GTGAACGCGCTGGTCGACGCTCATATCGCGCAAGTGCGGACCAAGATGAAGGAATTGCGCGCCTTGGAGCGCGAGTTAAT
GGATCTGCGACGCTCCTGCGATAGCGCCCGAACCTCGCGCGAGTGCGGCATTCTCAACAGCTTGGCCGAGCCCGCCTGA

Upstream 100 bases:

>100_bases
TTTGTTCATAGATCGCTCTTCATTGACAAGGTTTTCCCCGGATGCCATCATTAGAAAACCTCTAGTAGATATAGAGTCAA
GTTTTTTATAGGAAGCAACC

Downstream 100 bases:

>100_bases
AGCTCGAGCGTGTCATCGGTGCTGGAAGTGATCGGGTCCAGTTCTGAGAGCCACGTGCCGCGCTCCATCATGCGAAAGCG
CGCGATTCTGACGTTTTGAG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MMRIGELGKKADCLVQTVRFYESEGLLPEPARSEGNFRLYDEVHLQRLLFIRRCRAKDMTLDEIRQLLNLRDRPELGCGE
VNALVDAHIAQVRTKMKELRALERELMDLRRSCDSARTSRECGILNSLAEPA

Sequences:

>Translated_132_residues
MMRIGELGKKADCLVQTVRFYESEGLLPEPARSEGNFRLYDEVHLQRLLFIRRCRAKDMTLDEIRQLLNLRDRPELGCGE
VNALVDAHIAQVRTKMKELRALERELMDLRRSCDSARTSRECGILNSLAEPA
>Mature_132_residues
MMRIGELGKKADCLVQTVRFYESEGLLPEPARSEGNFRLYDEVHLQRLLFIRRCRAKDMTLDEIRQLLNLRDRPELGCGE
VNALVDAHIAQVRTKMKELRALERELMDLRRSCDSARTSRECGILNSLAEPA

Specific function: Transcriptional regulator [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789687, Length=134, Percent_Identity=39.5522388059701, Blast_Score=95, Evalue=1e-21,
Organism=Escherichia coli, GI1786695, Length=128, Percent_Identity=28.90625, Blast_Score=69, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15231; Mature: 15231

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRIGELGKKADCLVQTVRFYESEGLLPEPARSEGNFRLYDEVHLQRLLFIRRCRAKDMT
CCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC
LDEIRQLLNLRDRPELGCGEVNALVDAHIAQVRTKMKELRALERELMDLRRSCDSARTSR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ECGILNSLAEPA
HHHHHHHHCCCC
>Mature Secondary Structure
MMRIGELGKKADCLVQTVRFYESEGLLPEPARSEGNFRLYDEVHLQRLLFIRRCRAKDMT
CCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCC
LDEIRQLLNLRDRPELGCGEVNALVDAHIAQVRTKMKELRALERELMDLRRSCDSARTSR
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ECGILNSLAEPA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]