Click here to switch to the map view.

The map label for this gene is ydhO [H]

Identifier: 94311080

GI number: 94311080

Start: 2333220

End: 2333900

Strand: Reverse

Name: ydhO [H]

Synonym: Rmet_2142

Alternate gene names: 94311080

Gene position: 2333900-2333220 (Counterclockwise)

Preceding gene: 94311081

Following gene: 94311078

Centisome position: 59.42

GC content: 61.09

Gene sequence:

>681_bases
ATGCAGCGAACGGTACTTCATTCCCTGGCGCGCGCCGCCGTTGGAATTGCCATTGTCTGCGGTGCGACTGTGTCGAATGG
AGTGCTGGCGGATACGGTGTTCAAGGATACCGACGCCCGGATCGATGCCCGTGCGGATGTCACGGACGCGCATCCGGAAG
GCAAGCGTGGCTTGCTGTCGTCGATGATGAACTCCACCAGCAATGTCGCCACGAAAGCTGGCGACCTGGTCATGAACGCG
CTGGGTCTGATCGGTGTTCGTTATCGCTTCGGCGGTAACAGCCCCGAGTCGGGTCTGGACTGCAGCGGCTTCGTCCGCTA
CGTGTTCAACGACACCTTCGGCTTCATGTTGCCCCGTCGCTCCGTCGAAATGAGCCAGGTTGGCGCCACGGTTGCGGCGA
ACGATCTGCGGCCCGGCGATCTGGTGTTCTTTAACACCATGCGCCACACGTTCTCGCACGTCGGCATCTATATTGGCGAC
AACAAGTTCGTGCACGCGCCGTCCACCGGCAGCAAGATCCGTGTCGATGACATGCGTGCCGCCTACTGGGTGACGCGCTA
CAACGGTGCCCGCCGTATCGACGATTCGGCGCGTGGCTCGGTCGAGAACACCAGCAACATGATCGAGACGCTCAAGCGTT
ACGATCCGAATGCCCAGGGCCGCTCGCTTTACGGTGGCTAA

Upstream 100 bases:

>100_bases
CTACTGGCGTACTTCTTGCGTCCGATCCGCCCTGATGTTTTCACGCTGTCCGGTGTTGTCTTACTCGCCGGTCAGATTTG
TCCGATCATCAGGAGAACCA

Downstream 100 bases:

>100_bases
GTACGGTGCCTAGGATTTGCGGCTGCTGAAGCGGCAAATCCCGAAGGCAAAACAAAAAAGGACTGCTCAGGCAGTCCTTT
TTTGTTGTGTGTTGTTTGGG

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MQRTVLHSLARAAVGIAIVCGATVSNGVLADTVFKDTDARIDARADVTDAHPEGKRGLLSSMMNSTSNVATKAGDLVMNA
LGLIGVRYRFGGNSPESGLDCSGFVRYVFNDTFGFMLPRRSVEMSQVGATVAANDLRPGDLVFFNTMRHTFSHVGIYIGD
NKFVHAPSTGSKIRVDDMRAAYWVTRYNGARRIDDSARGSVENTSNMIETLKRYDPNAQGRSLYGG

Sequences:

>Translated_226_residues
MQRTVLHSLARAAVGIAIVCGATVSNGVLADTVFKDTDARIDARADVTDAHPEGKRGLLSSMMNSTSNVATKAGDLVMNA
LGLIGVRYRFGGNSPESGLDCSGFVRYVFNDTFGFMLPRRSVEMSQVGATVAANDLRPGDLVFFNTMRHTFSHVGIYIGD
NKFVHAPSTGSKIRVDDMRAAYWVTRYNGARRIDDSARGSVENTSNMIETLKRYDPNAQGRSLYGG
>Mature_226_residues
MQRTVLHSLARAAVGIAIVCGATVSNGVLADTVFKDTDARIDARADVTDAHPEGKRGLLSSMMNSTSNVATKAGDLVMNA
LGLIGVRYRFGGNSPESGLDCSGFVRYVFNDTFGFMLPRRSVEMSQVGATVAANDLRPGDLVFFNTMRHTFSHVGIYIGD
NKFVHAPSTGSKIRVDDMRAAYWVTRYNGARRIDDSARGSVENTSNMIETLKRYDPNAQGRSLYGG

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=42.8571428571429, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788501, Length=109, Percent_Identity=51.3761467889908, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1786421, Length=113, Percent_Identity=41.5929203539823, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=40, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 24481; Mature: 24481

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRTVLHSLARAAVGIAIVCGATVSNGVLADTVFKDTDARIDARADVTDAHPEGKRGLLS
CCHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHCCCCCCCEECCCCCCCCCCCCHHHHHH
SMMNSTSNVATKAGDLVMNALGLIGVRYRFGGNSPESGLDCSGFVRYVFNDTFGFMLPRR
HHHHCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHCCCC
SVEMSQVGATVAANDLRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIRVDDMRA
CCCHHHHCCEEEECCCCCCCEEEEHHHHHHHHHEEEEECCCEEEECCCCCCEEEECCCCE
AYWVTRYNGARRIDDSARGSVENTSNMIETLKRYDPNAQGRSLYGG
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQRTVLHSLARAAVGIAIVCGATVSNGVLADTVFKDTDARIDARADVTDAHPEGKRGLLS
CCHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHCCCCCCCEECCCCCCCCCCCCHHHHHH
SMMNSTSNVATKAGDLVMNALGLIGVRYRFGGNSPESGLDCSGFVRYVFNDTFGFMLPRR
HHHHCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHCCCC
SVEMSQVGATVAANDLRPGDLVFFNTMRHTFSHVGIYIGDNKFVHAPSTGSKIRVDDMRA
CCCHHHHCCEEEECCCCCCCEEEEHHHHHHHHHEEEEECCCEEEECCCCCCEEEECCCCE
AYWVTRYNGARRIDDSARGSVENTSNMIETLKRYDPNAQGRSLYGG
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]