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The map label for this gene is pilF

Identifier: 94311046

GI number: 94311046

Start: 2290059

End: 2290835

Strand: Reverse

Name: pilF

Synonym: Rmet_2108

Alternate gene names: NA

Gene position: 2290835-2290059 (Counterclockwise)

Preceding gene: 94311047

Following gene: 94311045

Centisome position: 58.32

GC content: 63.71

Gene sequence:

>777_bases
ATGACCCGTCTGATCGTTGCTGCCCTGTTCGGGCTGATGCTGTCCGCCTGTTCGTTGCCGCCTGCACCCGCCCAGGACAT
CAAGACCGCTTCCGATCAGACTCCGGCCGACAAGCGCGCCAGTATCAGGCTGCGCCTGGCCACGCAGTACCTCGAGGCGC
GCCAGTATTCGGTGGCGCTTGACGAGGTCAAGCAGGCCATCAATATCGATCCGACGCTGGTCGACGCCTATCACGTTCGG
GCGCTGGTCTACATGGGCATGAACGAGACCGCCCTGGCCGAAGACAGTTTCCGCACCGCGCTGAGCATGCGTGACAGCGA
CCCGGACGTGTTGAACAACTACGGCTGGTTCCTGTGCCAGAACAACCGCTACGCAGAGGCGAAGGCCATGCTGCAGCGCG
CGGTGCAGGCGCCGTCCATGAATGGCCCCGTCAAGCCGCTGACGAACTTGGGCGCCTGCGAGATGCGCAATGGCGACCTG
ATTTCGGCGCAGAAGAGTCTCCAGACGGCCTATGGCTACGACCGCAATGATCCGGCGTTGCTGACGAACCTCGCGCAGCT
CAGTTTCCAACGCGGGGAGATGCCGCAGGCCAAGGACTACGTTGGCCGCGTCAACAGCAGCCGCTTTGCCAGCGCGCAAT
CCCTCTGGCTGGGTGCGCGCATCGCCCGCCGACAGGGCGATACCGAAACACAGAACGCACTCACGGCACAACTGCGCAGC
CGGTTCCCCGACTCGCGCGAGTTGACCGCATACGAGAGAGGAGCTTGGGATGAGTGA

Upstream 100 bases:

>100_bases
TCATGGATCGTACCCGTCTGGCCGAGCGCGGCAAGTTCGGCAAGATCACGCCACTGGTGCCGGTGGCTGACGCCGGCGCC
CCCCGGGAGGCCCGTCCTGC

Downstream 100 bases:

>100_bases
ACAAGAGCGCGCCGACAGCCAGGCCGCGACGACGGGTCACGTCGGCGGTGGCGCGACAGACTCCGACCGCGAGGCTGTTG
CCCGCGAGATCGGGGCGAAA

Product: type IV pilus biogenesis protein PilF

Products: NA

Alternate protein names: Type IV Pilus Biogenesis Protein PilF; Fimbrial Biogenesis Protein; TPR Repeat-Containing Protein; Fimbrial Biogenesis And Twitching Motility Protein; Type 4 Fimbrial Biogenesis Protein; Type 4 Fimbrial Biogenesis Protein PilF; PilF Type IV Pilus Assembly Protein; Type IV Pili Biogenesis Protein PilF; Type IV Pilus Assembly Protein PilF; TPR Repeat-Containing Pilus Assembly Protein PilF; Type Iv Pilus Biogenesis/Stability Protein Pilw; Type IV Fimbrial Biogenesis Protein; Tpr Repeat Protein; LysM Domain-Containing Protein; Tfp Pilus Assembly Protein PilF; Protein Involved In Fimbrial Biogenesis; Type 4 Pilus Biogenesis Protein; TPR Domain-Containing Protein; Type IV Pilus Biogenesis Protein Pilf; Lipoprotein

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTRLIVAALFGLMLSACSLPPAPAQDIKTASDQTPADKRASIRLRLATQYLEARQYSVALDEVKQAINIDPTLVDAYHVR
ALVYMGMNETALAEDSFRTALSMRDSDPDVLNNYGWFLCQNNRYAEAKAMLQRAVQAPSMNGPVKPLTNLGACEMRNGDL
ISAQKSLQTAYGYDRNDPALLTNLAQLSFQRGEMPQAKDYVGRVNSSRFASAQSLWLGARIARRQGDTETQNALTAQLRS
RFPDSRELTAYERGAWDE

Sequences:

>Translated_258_residues
MTRLIVAALFGLMLSACSLPPAPAQDIKTASDQTPADKRASIRLRLATQYLEARQYSVALDEVKQAINIDPTLVDAYHVR
ALVYMGMNETALAEDSFRTALSMRDSDPDVLNNYGWFLCQNNRYAEAKAMLQRAVQAPSMNGPVKPLTNLGACEMRNGDL
ISAQKSLQTAYGYDRNDPALLTNLAQLSFQRGEMPQAKDYVGRVNSSRFASAQSLWLGARIARRQGDTETQNALTAQLRS
RFPDSRELTAYERGAWDE
>Mature_257_residues
TRLIVAALFGLMLSACSLPPAPAQDIKTASDQTPADKRASIRLRLATQYLEARQYSVALDEVKQAINIDPTLVDAYHVRA
LVYMGMNETALAEDSFRTALSMRDSDPDVLNNYGWFLCQNNRYAEAKAMLQRAVQAPSMNGPVKPLTNLGACEMRNGDLI
SAQKSLQTAYGYDRNDPALLTNLAQLSFQRGEMPQAKDYVGRVNSSRFASAQSLWLGARIARRQGDTETQNALTAQLRSR
FPDSRELTAYERGAWDE

Specific function: Unknown

COG id: COG3063

COG function: function code NU; Tfp pilus assembly protein PilF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28647; Mature: 28515

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLIVAALFGLMLSACSLPPAPAQDIKTASDQTPADKRASIRLRLATQYLEARQYSVAL
CHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHH
DEVKQAINIDPTLVDAYHVRALVYMGMNETALAEDSFRTALSMRDSDPDVLNNYGWFLCQ
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEC
NNRYAEAKAMLQRAVQAPSMNGPVKPLTNLGACEMRNGDLISAQKSLQTAYGYDRNDPAL
CCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
LTNLAQLSFQRGEMPQAKDYVGRVNSSRFASAQSLWLGARIARRQGDTETQNALTAQLRS
HHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RFPDSRELTAYERGAWDE
HCCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
TRLIVAALFGLMLSACSLPPAPAQDIKTASDQTPADKRASIRLRLATQYLEARQYSVAL
HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHEEHHHHHHHHHHHHHHHHH
DEVKQAINIDPTLVDAYHVRALVYMGMNETALAEDSFRTALSMRDSDPDVLNNYGWFLCQ
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEC
NNRYAEAKAMLQRAVQAPSMNGPVKPLTNLGACEMRNGDLISAQKSLQTAYGYDRNDPAL
CCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
LTNLAQLSFQRGEMPQAKDYVGRVNSSRFASAQSLWLGARIARRQGDTETQNALTAQLRS
HHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RFPDSRELTAYERGAWDE
HCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA