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The map label for this gene is nirF [H]

Identifier: 94311018

GI number: 94311018

Start: 2258237

End: 2259409

Strand: Direct

Name: nirF [H]

Synonym: Rmet_2080

Alternate gene names: 94311018

Gene position: 2258237-2259409 (Clockwise)

Preceding gene: 94311017

Following gene: 94311019

Centisome position: 57.49

GC content: 67.77

Gene sequence:

>1173_bases
ATGCGCCGCACCGCACTTCCCGTCGTGCTGGCACTGAGCGCGCTGCTCGCCGGCTGCGCCACCGCGGTACGTGGCACCGG
CGATATGGGCGTCGTGGTCGAGCGCGCAGCCGGCCGCATCCAGGTCGTGGAAACCTCGGGCATGACCCGACTGGCCACGA
TCGATGGCTTCGGTGACCTGTCGCACGCCAGCGTGGTCTTCGCGCGCGACGGCCGGTACGCCTACGTCTTCGGCCGTGAC
GGTGGCCTGACCCGCGTGGACCTGCTGAATGCCAAGGTGACCCACCGTACCATCCAGGCAGGCAACAGCATCGGCGGCGC
CATTACCCAGGATGGCCGCGTGGTGGCCGCGCAGAATTACGAGCCCGGTGGCATCAGGTTGTTCGATGCCGCCACGCTCG
AACCGCTCGCCGACATCCCCGCCATCGGCCCAGACGGGCGACGCTCGAAGGTTGTCGGTCTGGCCGACCTGCCCGGCAAG
CGGCTGGCGGCGAGCCTGTTCGAGGCAGGCGAGATCTGGATCATCGACGTAGCCGACCCTCGCCACCCCAAAGTCACCAA
GCTGCCAGCAGGCAAGCAGCCTTATGACGGGCTGGTGACGCCCGACGGCCGTTGGTATCTGGCGGGACTGTTCGGGGAGG
ACGGCCTGGCGCTGGTGGACCTGTGGCAATCCCCGCCTGCCGCGCGGCATGTCCTGTCCGGCTATGGACGTGGCTCCGCA
CCGCTGCCCGTCTACAAGATGCCGCACCTGCGCGGCTGGGCCATGGCGCAGGGCAAGGCATGGCTGCCCGCCATCGGGCG
TCATGAAGTGCTCATCGCCGATACCGCCAACGGCTGGCAGGAAGCCGGACGCGTGGAAGTTGCGGGCCAGCCGGTGTTCG
TGATGGCGCAGCCTGACGGACGACAGGTCTGGGTGAACTTCGCGTTCCCGAACAACGAAACCGTCCAGGTCATCGACACA
GCCACCCGGAAGGTCGTGCGCACGCTCAAGCCTTGCCGTGGCGTGCTGCACATGGAGTTCACGCCCAAGGGCGAGGCAGT
CTGGCTGTCGTGCCGCGACGACAATCGCGTGGTGGTCTACGACACGACCAGTTACGAGCCGTTGGCCACGCTGCCGGCGG
ACCATCCAAGCGGCATCTTCTTCACCTCGCGCGCGCAGCGCTTCGGGATGTGA

Upstream 100 bases:

>100_bases
CCGCGATGCCGCCGTGGCGGCCATTCATGACACAGGACGAAGCACGATGGTTGATCGATCGACTCCAATCCGGGCAAGTG
CCCGCCGTACCGAAACCATG

Downstream 100 bases:

>100_bases
CCATGACGCCGGACGACCTGGACCGCCGCATCATCAACGCCTTGCAACTCGGACTGCCCGTTACGCCTCGGCCCTACGCC
GACGCGGCGCGGTCGCTCGG

Product: cytochrome d1, heme region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MRRTALPVVLALSALLAGCATAVRGTGDMGVVVERAAGRIQVVETSGMTRLATIDGFGDLSHASVVFARDGRYAYVFGRD
GGLTRVDLLNAKVTHRTIQAGNSIGGAITQDGRVVAAQNYEPGGIRLFDAATLEPLADIPAIGPDGRRSKVVGLADLPGK
RLAASLFEAGEIWIIDVADPRHPKVTKLPAGKQPYDGLVTPDGRWYLAGLFGEDGLALVDLWQSPPAARHVLSGYGRGSA
PLPVYKMPHLRGWAMAQGKAWLPAIGRHEVLIADTANGWQEAGRVEVAGQPVFVMAQPDGRQVWVNFAFPNNETVQVIDT
ATRKVVRTLKPCRGVLHMEFTPKGEAVWLSCRDDNRVVVYDTTSYEPLATLPADHPSGIFFTSRAQRFGM

Sequences:

>Translated_390_residues
MRRTALPVVLALSALLAGCATAVRGTGDMGVVVERAAGRIQVVETSGMTRLATIDGFGDLSHASVVFARDGRYAYVFGRD
GGLTRVDLLNAKVTHRTIQAGNSIGGAITQDGRVVAAQNYEPGGIRLFDAATLEPLADIPAIGPDGRRSKVVGLADLPGK
RLAASLFEAGEIWIIDVADPRHPKVTKLPAGKQPYDGLVTPDGRWYLAGLFGEDGLALVDLWQSPPAARHVLSGYGRGSA
PLPVYKMPHLRGWAMAQGKAWLPAIGRHEVLIADTANGWQEAGRVEVAGQPVFVMAQPDGRQVWVNFAFPNNETVQVIDT
ATRKVVRTLKPCRGVLHMEFTPKGEAVWLSCRDDNRVVVYDTTSYEPLATLPADHPSGIFFTSRAQRFGM
>Mature_390_residues
MRRTALPVVLALSALLAGCATAVRGTGDMGVVVERAAGRIQVVETSGMTRLATIDGFGDLSHASVVFARDGRYAYVFGRD
GGLTRVDLLNAKVTHRTIQAGNSIGGAITQDGRVVAAQNYEPGGIRLFDAATLEPLADIPAIGPDGRRSKVVGLADLPGK
RLAASLFEAGEIWIIDVADPRHPKVTKLPAGKQPYDGLVTPDGRWYLAGLFGEDGLALVDLWQSPPAARHVLSGYGRGSA
PLPVYKMPHLRGWAMAQGKAWLPAIGRHEVLIADTANGWQEAGRVEVAGQPVFVMAQPDGRQVWVNFAFPNNETVQVIDT
ATRKVVRTLKPCRGVLHMEFTPKGEAVWLSCRDDNRVVVYDTTSYEPLATLPADHPSGIFFTSRAQRFGM

Specific function: Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41924; Mature: 41924

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTALPVVLALSALLAGCATAVRGTGDMGVVVERAAGRIQVVETSGMTRLATIDGFGDL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCC
SHASVVFARDGRYAYVFGRDGGLTRVDLLNAKVTHRTIQAGNSIGGAITQDGRVVAAQNY
CCEEEEEEECCCEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCCEEECCCEEEEECCC
EPGGIRLFDAATLEPLADIPAIGPDGRRSKVVGLADLPGKRLAASLFEAGEIWIIDVADP
CCCCEEEEECCCCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCC
RHPKVTKLPAGKQPYDGLVTPDGRWYLAGLFGEDGLALVDLWQSPPAARHVLSGYGRGSA
CCCCEEECCCCCCCCCCEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCC
PLPVYKMPHLRGWAMAQGKAWLPAIGRHEVLIADTANGWQEAGRVEVAGQPVFVMAQPDG
CCCEEECCCCCCEEEECCCCCCCCCCCCEEEEEECCCCHHHCCEEEECCCCEEEEECCCC
RQVWVNFAFPNNETVQVIDTATRKVVRTLKPCRGVLHMEFTPKGEAVWLSCRDDNRVVVY
CEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCEEEEE
DTTSYEPLATLPADHPSGIFFTSRAQRFGM
ECCCCCCEEECCCCCCCCEEEECCHHHCCC
>Mature Secondary Structure
MRRTALPVVLALSALLAGCATAVRGTGDMGVVVERAAGRIQVVETSGMTRLATIDGFGDL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCC
SHASVVFARDGRYAYVFGRDGGLTRVDLLNAKVTHRTIQAGNSIGGAITQDGRVVAAQNY
CCEEEEEEECCCEEEEEECCCCCEEEEEECCEEEEEEEECCCCCCCEEECCCEEEEECCC
EPGGIRLFDAATLEPLADIPAIGPDGRRSKVVGLADLPGKRLAASLFEAGEIWIIDVADP
CCCCEEEEECCCCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCC
RHPKVTKLPAGKQPYDGLVTPDGRWYLAGLFGEDGLALVDLWQSPPAARHVLSGYGRGSA
CCCCEEECCCCCCCCCCEECCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCCCC
PLPVYKMPHLRGWAMAQGKAWLPAIGRHEVLIADTANGWQEAGRVEVAGQPVFVMAQPDG
CCCEEECCCCCCEEEECCCCCCCCCCCCEEEEEECCCCHHHCCEEEECCCCEEEEECCCC
RQVWVNFAFPNNETVQVIDTATRKVVRTLKPCRGVLHMEFTPKGEAVWLSCRDDNRVVVY
CEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCEEEEE
DTTSYEPLATLPADHPSGIFFTSRAQRFGM
ECCCCCCEEECCCCCCCCEEEECCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7588711; 2001732 [H]