Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 94310854

GI number: 94310854

Start: 2084420

End: 2085034

Strand: Direct

Name: ycaC [H]

Synonym: Rmet_1916

Alternate gene names: 94310854

Gene position: 2084420-2085034 (Clockwise)

Preceding gene: 94310852

Following gene: 94310855

Centisome position: 53.06

GC content: 60.98

Gene sequence:

>615_bases
ATGGCGTTCGGCATTCAGTCCATTGATCGTCAGACGCTGAAGAACAATGTGGTCGGCCTTGCCAAGGCCGCCAAGATCTT
CAATATCCCGACCACCATCAGCACCGTGGAAAGCGAGTCGTTCTCGGGCTACACGTTTCCAGAGCTCCTTGACGTGTTCC
CGAACGCGAAAACACTCGAGCGATCATCGATGAACTCCTGGGACGACCAGAAGGTGCGCGATGCGCTGAAGGCGGCCGGC
CGCAAGAAGATCGTGGCTGCCGGGCTGTGGACCGAGGTGTGCATTACCACCTTCGCCCTGTGCGCCATGCAGGACGCCGG
CTATGAGTTCTACGTGGTTGCGGATGCCTGTGGTGGCAATACCCGGGAAGCCCATGACTACGCGATGCAACGCATGATCC
AGGCCGGCGTGGTGCCGGTGACATGGCAGCAAGTACTGCTCGAATGGCAGCGCGACTGGGCGCATCACGACACCTATGAT
GCCGTGATGCAGCTCGTGAAGGAGCACTCCGGCGCCTACGGCATGGGTGTGGACTACGCCTACACGATGGTCCATAAAGC
CGCGCAACGGACCGCCACGCCGCACGAATCGCTCGCACCCGTACCGGCACGCTGA

Upstream 100 bases:

>100_bases
CGATGTCTCCGTACCCAGTCATGAAGATGATCGGAATATGAATGCCCATCTGCCCCAGCCTGGCCTGCAGATCCAGTCCG
CTCTGGCCACGCAGCCGCAG

Downstream 100 bases:

>100_bases
AGGTGGACTGACACACGGCTGCCTTGTCGGCAGCCGTGCCTTGCATCGAGCGCAACGCTGGGTTGCGCGGCGTCCCTATT
CAGGAATCCGGGCGCGTGCC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MAFGIQSIDRQTLKNNVVGLAKAAKIFNIPTTISTVESESFSGYTFPELLDVFPNAKTLERSSMNSWDDQKVRDALKAAG
RKKIVAAGLWTEVCITTFALCAMQDAGYEFYVVADACGGNTREAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHHDTYD
AVMQLVKEHSGAYGMGVDYAYTMVHKAAQRTATPHESLAPVPAR

Sequences:

>Translated_204_residues
MAFGIQSIDRQTLKNNVVGLAKAAKIFNIPTTISTVESESFSGYTFPELLDVFPNAKTLERSSMNSWDDQKVRDALKAAG
RKKIVAAGLWTEVCITTFALCAMQDAGYEFYVVADACGGNTREAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHHDTYD
AVMQLVKEHSGAYGMGVDYAYTMVHKAAQRTATPHESLAPVPAR
>Mature_203_residues
AFGIQSIDRQTLKNNVVGLAKAAKIFNIPTTISTVESESFSGYTFPELLDVFPNAKTLERSSMNSWDDQKVRDALKAAGR
KKIVAAGLWTEVCITTFALCAMQDAGYEFYVVADACGGNTREAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHHDTYDA
VMQLVKEHSGAYGMGVDYAYTMVHKAAQRTATPHESLAPVPAR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=150, Percent_Identity=36.6666666666667, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 22639; Mature: 22508

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGIQSIDRQTLKNNVVGLAKAAKIFNIPTTISTVESESFSGYTFPELLDVFPNAKTLE
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHCCCCHHHH
RSSMNSWDDQKVRDALKAAGRKKIVAAGLWTEVCITTFALCAMQDAGYEFYVVADACGGN
HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
TREAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHHDTYDAVMQLVKEHSGAYGMGVDYA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHH
YTMVHKAAQRTATPHESLAPVPAR
HHHHHHHHHHCCCCCHHCCCCCCC
>Mature Secondary Structure 
AFGIQSIDRQTLKNNVVGLAKAAKIFNIPTTISTVESESFSGYTFPELLDVFPNAKTLE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHCCCCHHHH
RSSMNSWDDQKVRDALKAAGRKKIVAAGLWTEVCITTFALCAMQDAGYEFYVVADACGGN
HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
TREAHDYAMQRMIQAGVVPVTWQQVLLEWQRDWAHHDTYDAVMQLVKEHSGAYGMGVDYA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHH
YTMVHKAAQRTATPHESLAPVPAR
HHHHHHHHHHCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]