Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 94310782

GI number: 94310782

Start: 1998516

End: 1999037

Strand: Direct

Name: ymdB [C]

Synonym: Rmet_1844

Alternate gene names: 94310782

Gene position: 1998516-1999037 (Clockwise)

Preceding gene: 94310778

Following gene: 94310794

Centisome position: 50.88

GC content: 64.94

Gene sequence:

>522_bases
ATGACAGGGGAACACTTGCAGGTCGTGCACGGCGATATTACCCGGATGGAAGTGGATGCCATCGTCAACGCGGCCAATAG
CGGCCTGCTGGGCGGTGGTGGCGTCGATGGCGCGATTCATGGCGCGGGCGGCCCGGCCATCATGGACGCGTGCCGCGCGA
TCCGTGATGCGCAAGGGGGCTGCCCGACCGGGGAAGCCGTGATCACCACCGGAGGCCTGCTGCCAGCACCCTATGTCATC
CACGCCGTGGGGCCGGTCTGGCATGGTGGCAGCAAGGAAGAGGAGACGCAGCTGGCGAGCGCCTACCGCAACAGCATCCG
TCTGGCGGGCGAGCACAATCTGCGCACGGTGGCATTTCCGAACATCAGTACCGGCATTTACGGCTTCCCGCGTGAGCGGG
CCGTGGACATCGCCATTGCCGCGGTGCGCGAGGCACTGCCGAAGTCCCCGTCCATCGAGCAGGTCACCTTCGTATGCTTC
GATGACGAGAACTATCGGCTCTATCGGGAGCGCTTGAGCTAA

Upstream 100 bases:

>100_bases
TGCGCGATGATCGGCCACACAGCGAAACGCCGTTTCGCGGCGTATGCTTGAGAACGGGCGCCATGTCATGGCCGCCCTAA
CCCGGAGACCAGGAGACACC

Downstream 100 bases:

>100_bases
GCCCGGCGACAGGACCGGGAAGCTACGGGACTAGGGCAACGCACTGCGGATCAGCAGGTTCACGCGCTCCGGCTGTTCGT
GGATGATCCAGTGCGTGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTGEHLQVVHGDITRMEVDAIVNAANSGLLGGGGVDGAIHGAGGPAIMDACRAIRDAQGGCPTGEAVITTGGLLPAPYVI
HAVGPVWHGGSKEEETQLASAYRNSIRLAGEHNLRTVAFPNISTGIYGFPRERAVDIAIAAVREALPKSPSIEQVTFVCF
DDENYRLYRERLS

Sequences:

>Translated_173_residues
MTGEHLQVVHGDITRMEVDAIVNAANSGLLGGGGVDGAIHGAGGPAIMDACRAIRDAQGGCPTGEAVITTGGLLPAPYVI
HAVGPVWHGGSKEEETQLASAYRNSIRLAGEHNLRTVAFPNISTGIYGFPRERAVDIAIAAVREALPKSPSIEQVTFVCF
DDENYRLYRERLS
>Mature_172_residues
TGEHLQVVHGDITRMEVDAIVNAANSGLLGGGGVDGAIHGAGGPAIMDACRAIRDAQGGCPTGEAVITTGGLLPAPYVIH
AVGPVWHGGSKEEETQLASAYRNSIRLAGEHNLRTVAFPNISTGIYGFPRERAVDIAIAAVREALPKSPSIEQVTFVCFD
DENYRLYRERLS

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=48.2758620689655, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI13569840, Length=171, Percent_Identity=47.953216374269, Blast_Score=157, Evalue=5e-39,
Organism=Homo sapiens, GI20336746, Length=173, Percent_Identity=34.1040462427746, Blast_Score=104, Evalue=3e-23,
Organism=Homo sapiens, GI154813199, Length=140, Percent_Identity=38.5714285714286, Blast_Score=99, Evalue=1e-21,
Organism=Homo sapiens, GI93141018, Length=176, Percent_Identity=31.25, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI93141020, Length=176, Percent_Identity=30.1136363636364, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI4758496, Length=176, Percent_Identity=30.1136363636364, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI207450721, Length=155, Percent_Identity=34.8387096774194, Blast_Score=87, Evalue=5e-18,
Organism=Homo sapiens, GI8923143, Length=155, Percent_Identity=34.8387096774194, Blast_Score=87, Evalue=6e-18,
Organism=Homo sapiens, GI8923920, Length=176, Percent_Identity=27.8409090909091, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI226371718, Length=163, Percent_Identity=33.7423312883436, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371716, Length=163, Percent_Identity=33.7423312883436, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371714, Length=163, Percent_Identity=33.7423312883436, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371712, Length=163, Percent_Identity=33.7423312883436, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371710, Length=163, Percent_Identity=33.7423312883436, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI226371706, Length=163, Percent_Identity=33.7423312883436, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1787283, Length=168, Percent_Identity=55.3571428571429, Blast_Score=196, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17538214, Length=169, Percent_Identity=42.0118343195266, Blast_Score=123, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24586353, Length=150, Percent_Identity=34.6666666666667, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18265; Mature: 18134

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGEHLQVVHGDITRMEVDAIVNAANSGLLGGGGVDGAIHGAGGPAIMDACRAIRDAQGG
CCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCC
CPTGEAVITTGGLLPAPYVIHAVGPVWHGGSKEEETQLASAYRNSIRLAGEHNLRTVAFP
CCCCCEEEEECCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEECC
NISTGIYGFPRERAVDIAIAAVREALPKSPSIEQVTFVCFDDENYRLYRERLS
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHCC
>Mature Secondary Structure 
TGEHLQVVHGDITRMEVDAIVNAANSGLLGGGGVDGAIHGAGGPAIMDACRAIRDAQGG
CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCC
CPTGEAVITTGGLLPAPYVIHAVGPVWHGGSKEEETQLASAYRNSIRLAGEHNLRTVAFP
CCCCCEEEEECCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEECC
NISTGIYGFPRERAVDIAIAAVREALPKSPSIEQVTFVCFDDENYRLYRERLS
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7851418 [H]