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The map label for this gene is yfdE [H]

Identifier: 94310694

GI number: 94310694

Start: 1905485

End: 1906696

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_1756

Alternate gene names: 94310694

Gene position: 1906696-1905485 (Counterclockwise)

Preceding gene: 94310698

Following gene: 94310693

Centisome position: 48.54

GC content: 64.85

Gene sequence:

>1212_bases
ATGAAGCAAGAAAACATGGCATCGCTGCCGCTGGCCGGTGTGCGGGTGCTGGACCTGTCACGTGTCCTGGCAGGACCGAT
GTGCGCGATGGCGCTGGCCGACCTGGGCGCGGACGTCATCAAGGTGGAACATCCCGCCCGTGGCGACGACACCCGAGACT
GGGGCGTGCGCATCGGCACCCGCAATACCTCCTATTTCAATAGCGCGAACCGCAACAAGCGGTCCGTGACACTCGATCTG
CAAAGCGAAGCCGGTCTGGCGCTGGCACGCCAACTGGCTGCGCAGTGCGACGTGGTCATCCAGAACTTCAAGGTGGGCGG
AGCGGAAAAGCTCGGCCTGGGTTACGAGCAGCTCAGCGAAATCAATCCGCGCCTGGTCTACTGCTCGATTTCCGGTTATG
CGCGCTTTACGCCGGAAGCCGAACGTCCGGGCTACGACCTCGTCGTGCAGGGCGAGTCCGGCGTGATGGCTACCAACGGC
GAGGCCGGGCAGGGGCCGCTGAAGTTCGGCGTGGCAGCGGTCGACATGTTCACGGGCATGTATTCGGCCCAGGCGATCCT
GGCTGCGCTGTTTGCGCGCCAGTCCACCGGCCGTGGCCGACACGTGCAGATGGCGCTCTACGACTGCGGCGTGATGATCA
CGTCCTACTACGGCATGGAAGCCTTGCTCAAGGCCGGCGATCCGCCCAAGTTCGGCAATGCGCATCCGTCCATCGTGCCG
TACGGTGTGTTCGAGGCCGCCGATGGCCCGCTGGTGATCACGGTCGGCAACAACGGACAGTTCCAGCGCTTCTGCCGCGA
GGTCATCGACTGCCCGGAATGGGCCGATGACGAACGCTTTGCCACCAACACGGCGCGCTCGGCTCATCGCGACGTACTGC
TCGTGGAGGTACGGGAGCGGCTGCAGCGCTTTACGCGCGCCGAATTGCTGCAACGCCTGACGGCCGCGCAGATTCCGTGC
GGCGAGGTGCTGGGCATGCTGGATGCCCTGCAATCGGAACGCACCACGCAGGCTGGCTTGCTGCATCGATTCGAGGACAG
CGAGGCCGGTGCCCAGGCGGTGCTCGCCCCGCCGTATGCGCTCGATGGGCAGCGCCTGCCCGTGCGCATGCCGCCGCCCC
ACATGGGAGAGCACACACATGAAGTGTTCAAGGAATTGCTGAAGCTCGACGACAGCGCCATCGCGGATCTGCAATCCAGA
GGCGTGATCTGA

Upstream 100 bases:

>100_bases
TTGCAATTGTCAAGCATTCGGAACATATGGACAATCACCGCTGGTAAAGAAAACCGGACCTCCCTGCAGGCACAGATCCG
GACGCGGGGAGACGCAATCA

Downstream 100 bases:

>100_bases
CACCCCGAATTTTCGATCGACAGGAGACAAGACAATGACCAAGCTGCTAATCAGCCGCCGCCAGGTACTGAAGGCCGGCG
CTGCCGCGTCGATGGCCGCC

Product: putative acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKQENMASLPLAGVRVLDLSRVLAGPMCAMALADLGADVIKVEHPARGDDTRDWGVRIGTRNTSYFNSANRNKRSVTLDL
QSEAGLALARQLAAQCDVVIQNFKVGGAEKLGLGYEQLSEINPRLVYCSISGYARFTPEAERPGYDLVVQGESGVMATNG
EAGQGPLKFGVAAVDMFTGMYSAQAILAALFARQSTGRGRHVQMALYDCGVMITSYYGMEALLKAGDPPKFGNAHPSIVP
YGVFEAADGPLVITVGNNGQFQRFCREVIDCPEWADDERFATNTARSAHRDVLLVEVRERLQRFTRAELLQRLTAAQIPC
GEVLGMLDALQSERTTQAGLLHRFEDSEAGAQAVLAPPYALDGQRLPVRMPPPHMGEHTHEVFKELLKLDDSAIADLQSR
GVI

Sequences:

>Translated_403_residues
MKQENMASLPLAGVRVLDLSRVLAGPMCAMALADLGADVIKVEHPARGDDTRDWGVRIGTRNTSYFNSANRNKRSVTLDL
QSEAGLALARQLAAQCDVVIQNFKVGGAEKLGLGYEQLSEINPRLVYCSISGYARFTPEAERPGYDLVVQGESGVMATNG
EAGQGPLKFGVAAVDMFTGMYSAQAILAALFARQSTGRGRHVQMALYDCGVMITSYYGMEALLKAGDPPKFGNAHPSIVP
YGVFEAADGPLVITVGNNGQFQRFCREVIDCPEWADDERFATNTARSAHRDVLLVEVRERLQRFTRAELLQRLTAAQIPC
GEVLGMLDALQSERTTQAGLLHRFEDSEAGAQAVLAPPYALDGQRLPVRMPPPHMGEHTHEVFKELLKLDDSAIADLQSR
GVI
>Mature_403_residues
MKQENMASLPLAGVRVLDLSRVLAGPMCAMALADLGADVIKVEHPARGDDTRDWGVRIGTRNTSYFNSANRNKRSVTLDL
QSEAGLALARQLAAQCDVVIQNFKVGGAEKLGLGYEQLSEINPRLVYCSISGYARFTPEAERPGYDLVVQGESGVMATNG
EAGQGPLKFGVAAVDMFTGMYSAQAILAALFARQSTGRGRHVQMALYDCGVMITSYYGMEALLKAGDPPKFGNAHPSIVP
YGVFEAADGPLVITVGNNGQFQRFCREVIDCPEWADDERFATNTARSAHRDVLLVEVRERLQRFTRAELLQRLTAAQIPC
GEVLGMLDALQSERTTQAGLLHRFEDSEAGAQAVLAPPYALDGQRLPVRMPPPHMGEHTHEVFKELLKLDDSAIADLQSR
GVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=402, Percent_Identity=37.0646766169154, Blast_Score=295, Evalue=6e-80,
Organism=Homo sapiens, GI300863124, Length=428, Percent_Identity=35.2803738317757, Blast_Score=284, Evalue=1e-76,
Organism=Homo sapiens, GI300863126, Length=402, Percent_Identity=33.0845771144279, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI13376042, Length=428, Percent_Identity=31.5420560747664, Blast_Score=231, Evalue=7e-61,
Organism=Homo sapiens, GI266456254, Length=380, Percent_Identity=26.8421052631579, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI42794625, Length=380, Percent_Identity=26.5789473684211, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=30.8880308880309, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=30.5019305019305, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=36.986301369863, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=36.3013698630137, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI87082093, Length=368, Percent_Identity=31.7934782608696, Blast_Score=214, Evalue=7e-57,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=29.7362110311751, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI1786222, Length=323, Percent_Identity=24.7678018575851, Blast_Score=91, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=203, Percent_Identity=27.0935960591133, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=37.8787878787879, Blast_Score=272, Evalue=3e-73,
Organism=Drosophila melanogaster, GI24585488, Length=402, Percent_Identity=24.6268656716418, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43809; Mature: 43809

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQENMASLPLAGVRVLDLSRVLAGPMCAMALADLGADVIKVEHPARGDDTRDWGVRIGT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECC
RNTSYFNSANRNKRSVTLDLQSEAGLALARQLAAQCDVVIQNFKVGGAEKLGLGYEQLSE
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHC
INPRLVYCSISGYARFTPEAERPGYDLVVQGESGVMATNGEAGQGPLKFGVAAVDMFTGM
CCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHH
YSAQAILAALFARQSTGRGRHVQMALYDCGVMITSYYGMEALLKAGDPPKFGNAHPSIVP
HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
YGVFEAADGPLVITVGNNGQFQRFCREVIDCPEWADDERFATNTARSAHRDVLLVEVRER
CCCEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
LQRFTRAELLQRLTAAQIPCGEVLGMLDALQSERTTQAGLLHRFEDSEAGAQAVLAPPYA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEECCCCC
LDGQRLPVRMPPPHMGEHTHEVFKELLKLDDSAIADLQSRGVI
CCCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKQENMASLPLAGVRVLDLSRVLAGPMCAMALADLGADVIKVEHPARGDDTRDWGVRIGT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECC
RNTSYFNSANRNKRSVTLDLQSEAGLALARQLAAQCDVVIQNFKVGGAEKLGLGYEQLSE
CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHC
INPRLVYCSISGYARFTPEAERPGYDLVVQGESGVMATNGEAGQGPLKFGVAAVDMFTGM
CCCEEEEEEECCCEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHH
YSAQAILAALFARQSTGRGRHVQMALYDCGVMITSYYGMEALLKAGDPPKFGNAHPSIVP
HHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
YGVFEAADGPLVITVGNNGQFQRFCREVIDCPEWADDERFATNTARSAHRDVLLVEVRER
CCCEECCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHH
LQRFTRAELLQRLTAAQIPCGEVLGMLDALQSERTTQAGLLHRFEDSEAGAQAVLAPPYA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEECCCCC
LDGQRLPVRMPPPHMGEHTHEVFKELLKLDDSAIADLQSRGVI
CCCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]