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The map label for this gene is agrB [H]

Identifier: 94310687

GI number: 94310687

Start: 1896234

End: 1897430

Strand: Reverse

Name: agrB [H]

Synonym: Rmet_1749

Alternate gene names: 94310687

Gene position: 1897430-1896234 (Counterclockwise)

Preceding gene: 94310688

Following gene: 94310686

Centisome position: 48.3

GC content: 60.74

Gene sequence:

>1197_bases
ATGACCCAAATCGAACGAAAGAACAATAGTCGCGTGCCGTTGTCCCGCAGGCACATCAAGACAGCAATCGCGGTGGGGGT
AGTGGCAGCTGCAGCGCTGATTGTGGGAATCGTCCCTCGAGTGCATGGTGAGGCTGCCCTGCAAAAGCGCAGTATCGACG
CACAGACTCCGGTTGTCGGTATTGTTTCCCCGAAGCCGGCGGCATCCTCGCAGGAGATCACGCTGCCTGCCGATGTGCGC
GCCTATCAGGATGCGGCCATCCATGCGCGGGTGAATGGATACCTTCGAAATTGGTATGTGGATATCGGTACTGAGGTAAA
GGCTGGCCAGCTGCTGGCCGAAATCGACGCTCCGGAAGTCGCGGACCAACTTCGGCAAGCACGCGCAGACGAAGAGACTG
CCTCTGCCAACTACGCACTCGCGAAGACTACGGCCGACAGGTGGAAGGATCTGCAGTCCACCAACTCGGTAGCGCAGCAG
GAAACCGACCAGAAGGTCGCTGACATGCAGGCCAAAGCGGCATTGCTAGCTTCGGCTCGCTCGAATACAGCGCGCGTCGC
GCAACTGGCTTCGTACACGCAGATTCGGGCGCCGTTCGATGGTGTGATTACCGCACGGAACGTAGACGCCGGTGCGCTTA
TTGATGCGGGGAGTGCGCCTAACCAGGGGCGTGAACTGTTTCACATCTCGGCAGGCAACCGTCTTCGTGTCTATGTGCAG
GTCCCACAGTCAGTGAGTGCAGCGGTTGCGCCAGGCACCAAGGCTTGGTTGGCGCTACCGCAATCGCCGGGCCACCACTT
CCCGGCCACGATTACGCGGACGGCGGGCGCAATGGACCCGGTGACCCGTAGTCTCCGAGTCGAGCTCGATGTGGACAGTC
AGGGTGGAAAGATCCTCCCAGGTGCCTACGCCGAGGTCCATATCGTGCCGGAAGCGGATAGGGCGGGATTGGATCTACCC
GCGAGTACGCTTATGTTTCCGGCCGGCGGGGCATCGGTGGCAATCATCGACCAAAACGGGAAGGTCGCGATTCAGAAGAT
CCAGTTGGGACGTGACTTTGGTTCGCACGTAGAGGTCTTGGGCGGACTGGCTGCGAGTGCCAAGGTTATCGTGAACCCGG
GGGATGGGCTTGCCGGCGGCGCGCGTGTGAGAGTGTCTTCGCCGCAGACGGTCGCGTCGCAAGGAGCTAAATCGTGA

Upstream 100 bases:

>100_bases
CGACCCTCGTGCTCGTCCCCACATTCTTCGCGCTCTTGCATGGTTGGCTCGAAAAGCGAGCCAACTCGCGCCAAAACACA
GTGAAAGTACAGAGTCCGGT

Downstream 100 bases:

>100_bases
TGAGGCTAGCCATAAGTGCGGTTTGTATATGGCTAGCGGGGTGCTCTTTCGCACCGACTTACCACATTCCGGAGATGGAT
CTTCCCGCGAAGTATGCAGA

Product: RND efflux pump, membrane fusion protein, CzcB subfamily

Products: NA

Alternate protein names: Multidrug transporter mdtA [H]

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTQIERKNNSRVPLSRRHIKTAIAVGVVAAAALIVGIVPRVHGEAALQKRSIDAQTPVVGIVSPKPAASSQEITLPADVR
AYQDAAIHARVNGYLRNWYVDIGTEVKAGQLLAEIDAPEVADQLRQARADEETASANYALAKTTADRWKDLQSTNSVAQQ
ETDQKVADMQAKAALLASARSNTARVAQLASYTQIRAPFDGVITARNVDAGALIDAGSAPNQGRELFHISAGNRLRVYVQ
VPQSVSAAVAPGTKAWLALPQSPGHHFPATITRTAGAMDPVTRSLRVELDVDSQGGKILPGAYAEVHIVPEADRAGLDLP
ASTLMFPAGGASVAIIDQNGKVAIQKIQLGRDFGSHVEVLGGLAASAKVIVNPGDGLAGGARVRVSSPQTVASQGAKS

Sequences:

>Translated_398_residues
MTQIERKNNSRVPLSRRHIKTAIAVGVVAAAALIVGIVPRVHGEAALQKRSIDAQTPVVGIVSPKPAASSQEITLPADVR
AYQDAAIHARVNGYLRNWYVDIGTEVKAGQLLAEIDAPEVADQLRQARADEETASANYALAKTTADRWKDLQSTNSVAQQ
ETDQKVADMQAKAALLASARSNTARVAQLASYTQIRAPFDGVITARNVDAGALIDAGSAPNQGRELFHISAGNRLRVYVQ
VPQSVSAAVAPGTKAWLALPQSPGHHFPATITRTAGAMDPVTRSLRVELDVDSQGGKILPGAYAEVHIVPEADRAGLDLP
ASTLMFPAGGASVAIIDQNGKVAIQKIQLGRDFGSHVEVLGGLAASAKVIVNPGDGLAGGARVRVSSPQTVASQGAKS
>Mature_397_residues
TQIERKNNSRVPLSRRHIKTAIAVGVVAAAALIVGIVPRVHGEAALQKRSIDAQTPVVGIVSPKPAASSQEITLPADVRA
YQDAAIHARVNGYLRNWYVDIGTEVKAGQLLAEIDAPEVADQLRQARADEETASANYALAKTTADRWKDLQSTNSVAQQE
TDQKVADMQAKAALLASARSNTARVAQLASYTQIRAPFDGVITARNVDAGALIDAGSAPNQGRELFHISAGNRLRVYVQV
PQSVSAAVAPGTKAWLALPQSPGHHFPATITRTAGAMDPVTRSLRVELDVDSQGGKILPGAYAEVHIVPEADRAGLDLPA
STLMFPAGGASVAIIDQNGKVAIQKIQLGRDFGSHVEVLGGLAASAKVIVNPGDGLAGGARVRVSSPQTVASQGAKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081796, Length=351, Percent_Identity=25.3561253561254, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI87082036, Length=346, Percent_Identity=23.121387283237, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786668, Length=336, Percent_Identity=26.4880952380952, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789929, Length=364, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1789665, Length=362, Percent_Identity=25.414364640884, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022824
- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 41625; Mature: 41493

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQIERKNNSRVPLSRRHIKTAIAVGVVAAAALIVGIVPRVHGEAALQKRSIDAQTPVVG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEE
IVSPKPAASSQEITLPADVRAYQDAAIHARVNGYLRNWYVDIGTEVKAGQLLAEIDAPEV
EECCCCCCCCCEEECCHHHHHHHHHEEEEEECCEEEEEEEEECCCCCCCHHEEECCCHHH
ADQLRQARADEETASANYALAKTTADRWKDLQSTNSVAQQETDQKVADMQAKAALLASAR
HHHHHHHCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SNTARVAQLASYTQIRAPFDGVITARNVDAGALIDAGSAPNQGRELFHISAGNRLRVYVQ
CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEEEECCCEEEEEEE
VPQSVSAAVAPGTKAWLALPQSPGHHFPATITRTAGAMDPVTRSLRVELDVDSQGGKILP
CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEECC
GAYAEVHIVPEADRAGLDLPASTLMFPAGGASVAIIDQNGKVAIQKIQLGRDFGSHVEVL
CCCEEEEEEECCCCCCCCCCHHHEEECCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHH
GGLAASAKVIVNPGDGLAGGARVRVSSPQTVASQGAKS
HCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHCCCCC
>Mature Secondary Structure 
TQIERKNNSRVPLSRRHIKTAIAVGVVAAAALIVGIVPRVHGEAALQKRSIDAQTPVVG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEE
IVSPKPAASSQEITLPADVRAYQDAAIHARVNGYLRNWYVDIGTEVKAGQLLAEIDAPEV
EECCCCCCCCCEEECCHHHHHHHHHEEEEEECCEEEEEEEEECCCCCCCHHEEECCCHHH
ADQLRQARADEETASANYALAKTTADRWKDLQSTNSVAQQETDQKVADMQAKAALLASAR
HHHHHHHCCCCHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SNTARVAQLASYTQIRAPFDGVITARNVDAGALIDAGSAPNQGRELFHISAGNRLRVYVQ
CCHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCEEEEEECCCEEEEEEE
VPQSVSAAVAPGTKAWLALPQSPGHHFPATITRTAGAMDPVTRSLRVELDVDSQGGKILP
CCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCEECC
GAYAEVHIVPEADRAGLDLPASTLMFPAGGASVAIIDQNGKVAIQKIQLGRDFGSHVEVL
CCCEEEEEEECCCCCCCCCCHHHEEECCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHH
GGLAASAKVIVNPGDGLAGGARVRVSSPQTVASQGAKS
HCCCCCCEEEEECCCCCCCCEEEEECCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA