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The map label for this gene is yngJ [H]

Identifier: 94310662

GI number: 94310662

Start: 1865058

End: 1866224

Strand: Direct

Name: yngJ [H]

Synonym: Rmet_1722

Alternate gene names: 94310662

Gene position: 1865058-1866224 (Clockwise)

Preceding gene: 94310661

Following gene: 94310663

Centisome position: 47.48

GC content: 62.55

Gene sequence:

>1167_bases
ATGCTTTATACCCAGGACCACCGCAGCATCATGGACAGTATTCGCCGGTTCGTCGCGGCCGAGATCGACCCGTTCGTCGA
CGAATGGGAAGCAGCGGAGACGTTTCCCGCCCACGCGCTATTCCGGAAGATGGGCGAGCTTGGATTCCTTGGCATCACCA
AGCCCGTGGAATACGGTGGGCTGGGTCTGGATTTCTCGTACGCCGTCGCCGCCGCCGAAGCCCTGGGCCATGCGCGCGCA
CAAGGTGTTGGGATGGGTATCGGCGTGCAAACCGACATGGCCACGCCTGCATTGGCGGCATTCGGCACTGACGCGCTCAA
GCGTGAATTCCTGGCACCAGCCATCGCCGGCGAGATGGTTGTCTCCATCGGCGTGTCGGAAGTCGGAGCGGGCTCCGACG
TCGCGTCGCTGAAGACACGCGCACGTCGCGACGGCGACGATTACGTGATCAGCGGCTCCAAGATGTGGATCACCAACGGC
ACGCAGGCCGACTGGATCTGCCTGCTTTGCAACACGTCGGACGGGCCGGTCCACAAGAACAAGTCGCTGATCATCGTGCC
GTTGAGGGAAAACGGCCGACTCGTGCGTGGCGTGGAAGTGCAGAAGATCCGCAAGATGGGCATGTGGTGCTCGGACACCG
CCCAGATCTTCTTCGATGACGTACGCGTGCCGGCGCGCAACCGTATTGGCGATGAGGGCATGGGGTTCATCTATCAGATG
AAACAATTCCAGGAGGAGCGCCTGAACGGCGCGGCCCGTCGGCTGGCGTGCAGTGCGCTGATCGAGGAGACCGCCGACTA
CCTCCGCCAGCGCGTGGCGTTCGGCAAGCCACTGCTCGACAACCAGTACATCCAGTTCAAGCTCGCCGAACTGAAGACCG
AACTCGAATCGCTGCGCGCGCTGGTTCACGTGGCGACGCGAGCCTATATCCAGGGCGAGGATGTGGTGGAACTGGCGTCG
ATGGCCAAGCTGAAGGCAGGCCGCCTGTCGCGCGAAATAGCCGACTGGTGCATCCAGTTCCAGGGCGGCATGGGTTACAC
GTGGGACAACCACGCCAATCGCGCCTATCGGGATTTCCGGCTTGGATCGATCGGTGGTGGCGCCGACGAGGTGATGCTGC
AAGTTATCGCCAAGCAGATGGGGCTGATGTCCCGCCACGACCGCTGA

Upstream 100 bases:

>100_bases
CGCGATGCAGTTCGGCGTTGCGCGTTTCTGACGCTTCCGACGCTTCCAACGCTTTCGCGCCTCATCAGATCTGAACAAAC
AAGGTACCCCGGAGACACAG

Downstream 100 bases:

>100_bases
GACGAGCCATGACCAACCCAGTCATCGTACGTTGCGTGGAGGGCGTGTTGTTCGCCACGCTCAACATCCCGGCCACGCGC
AATGCGCTCGCTCCGGAAGT

Product: acyl-CoA dehydrogenase, long-chain specific

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MLYTQDHRSIMDSIRRFVAAEIDPFVDEWEAAETFPAHALFRKMGELGFLGITKPVEYGGLGLDFSYAVAAAEALGHARA
QGVGMGIGVQTDMATPALAAFGTDALKREFLAPAIAGEMVVSIGVSEVGAGSDVASLKTRARRDGDDYVISGSKMWITNG
TQADWICLLCNTSDGPVHKNKSLIIVPLRENGRLVRGVEVQKIRKMGMWCSDTAQIFFDDVRVPARNRIGDEGMGFIYQM
KQFQEERLNGAARRLACSALIEETADYLRQRVAFGKPLLDNQYIQFKLAELKTELESLRALVHVATRAYIQGEDVVELAS
MAKLKAGRLSREIADWCIQFQGGMGYTWDNHANRAYRDFRLGSIGGGADEVMLQVIAKQMGLMSRHDR

Sequences:

>Translated_388_residues
MLYTQDHRSIMDSIRRFVAAEIDPFVDEWEAAETFPAHALFRKMGELGFLGITKPVEYGGLGLDFSYAVAAAEALGHARA
QGVGMGIGVQTDMATPALAAFGTDALKREFLAPAIAGEMVVSIGVSEVGAGSDVASLKTRARRDGDDYVISGSKMWITNG
TQADWICLLCNTSDGPVHKNKSLIIVPLRENGRLVRGVEVQKIRKMGMWCSDTAQIFFDDVRVPARNRIGDEGMGFIYQM
KQFQEERLNGAARRLACSALIEETADYLRQRVAFGKPLLDNQYIQFKLAELKTELESLRALVHVATRAYIQGEDVVELAS
MAKLKAGRLSREIADWCIQFQGGMGYTWDNHANRAYRDFRLGSIGGGADEVMLQVIAKQMGLMSRHDR
>Mature_388_residues
MLYTQDHRSIMDSIRRFVAAEIDPFVDEWEAAETFPAHALFRKMGELGFLGITKPVEYGGLGLDFSYAVAAAEALGHARA
QGVGMGIGVQTDMATPALAAFGTDALKREFLAPAIAGEMVVSIGVSEVGAGSDVASLKTRARRDGDDYVISGSKMWITNG
TQADWICLLCNTSDGPVHKNKSLIIVPLRENGRLVRGVEVQKIRKMGMWCSDTAQIFFDDVRVPARNRIGDEGMGFIYQM
KQFQEERLNGAARRLACSALIEETADYLRQRVAFGKPLLDNQYIQFKLAELKTELESLRALVHVATRAYIQGEDVVELAS
MAKLKAGRLSREIADWCIQFQGGMGYTWDNHANRAYRDFRLGSIGGGADEVMLQVIAKQMGLMSRHDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501857, Length=384, Percent_Identity=33.8541666666667, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI4557233, Length=378, Percent_Identity=33.8624338624339, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI4501859, Length=383, Percent_Identity=32.6370757180157, Blast_Score=191, Evalue=9e-49,
Organism=Homo sapiens, GI7656849, Length=367, Percent_Identity=35.149863760218, Blast_Score=178, Evalue=6e-45,
Organism=Homo sapiens, GI226958412, Length=379, Percent_Identity=31.6622691292876, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI226958414, Length=342, Percent_Identity=33.6257309941521, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI187960098, Length=381, Percent_Identity=31.758530183727, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI4557231, Length=381, Percent_Identity=31.758530183727, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI76496475, Length=387, Percent_Identity=29.4573643410853, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI4557235, Length=387, Percent_Identity=29.4573643410853, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI21361497, Length=376, Percent_Identity=27.1276595744681, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI7669494, Length=358, Percent_Identity=28.4916201117318, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI4503943, Length=358, Percent_Identity=28.4916201117318, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI38505218, Length=289, Percent_Identity=27.3356401384083, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI48976061, Length=298, Percent_Identity=26.8456375838926, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI211971008, Length=298, Percent_Identity=26.8456375838926, Blast_Score=87, Evalue=4e-17,
Organism=Escherichia coli, GI87081958, Length=380, Percent_Identity=27.6315789473684, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786223, Length=368, Percent_Identity=26.6304347826087, Blast_Score=118, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17551932, Length=380, Percent_Identity=50.2631578947368, Blast_Score=373, Evalue=1e-104,
Organism=Caenorhabditis elegans, GI17505929, Length=380, Percent_Identity=50.7894736842105, Blast_Score=358, Evalue=3e-99,
Organism=Caenorhabditis elegans, GI17508101, Length=376, Percent_Identity=32.9787234042553, Blast_Score=201, Evalue=4e-52,
Organism=Caenorhabditis elegans, GI17506239, Length=381, Percent_Identity=32.0209973753281, Blast_Score=191, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17570075, Length=381, Percent_Identity=32.5459317585302, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17538396, Length=379, Percent_Identity=30.3430079155673, Blast_Score=174, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI17569725, Length=381, Percent_Identity=30.1837270341207, Blast_Score=159, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17534899, Length=384, Percent_Identity=31.25, Blast_Score=156, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI71990804, Length=283, Percent_Identity=35.3356890459364, Blast_Score=152, Evalue=4e-37,
Organism=Caenorhabditis elegans, GI71985184, Length=376, Percent_Identity=30.3191489361702, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17533517, Length=380, Percent_Identity=30.2631578947368, Blast_Score=144, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI71985192, Length=302, Percent_Identity=30.4635761589404, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI32563615, Length=236, Percent_Identity=33.0508474576271, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI71982178, Length=278, Percent_Identity=25.8992805755396, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17534353, Length=364, Percent_Identity=28.8461538461538, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17531909, Length=242, Percent_Identity=28.5123966942149, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17562446, Length=295, Percent_Identity=27.1186440677966, Blast_Score=82, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17531913, Length=173, Percent_Identity=28.9017341040462, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356377, Length=377, Percent_Identity=34.4827586206897, Blast_Score=199, Evalue=2e-51,
Organism=Drosophila melanogaster, GI24646207, Length=378, Percent_Identity=34.1269841269841, Blast_Score=188, Evalue=7e-48,
Organism=Drosophila melanogaster, GI24666513, Length=376, Percent_Identity=30.5851063829787, Blast_Score=175, Evalue=4e-44,
Organism=Drosophila melanogaster, GI21355753, Length=380, Percent_Identity=32.1052631578947, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24660351, Length=380, Percent_Identity=30.5263157894737, Blast_Score=165, Evalue=5e-41,
Organism=Drosophila melanogaster, GI281363737, Length=340, Percent_Identity=30.2941176470588, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI19920834, Length=357, Percent_Identity=29.6918767507003, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42854; Mature: 42854

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYTQDHRSIMDSIRRFVAAEIDPFVDEWEAAETFPAHALFRKMGELGFLGITKPVEYGG
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCCC
LGLDFSYAVAAAEALGHARAQGVGMGIGVQTDMATPALAAFGTDALKREFLAPAIAGEMV
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHH
VSIGVSEVGAGSDVASLKTRARRDGDDYVISGSKMWITNGTQADWICLLCNTSDGPVHKN
HEECHHHCCCCCHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEEEEEECCCCCCCCC
KSLIIVPLRENGRLVRGVEVQKIRKMGMWCSDTAQIFFDDVRVPARNRIGDEGMGFIYQM
CCEEEEEECCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHH
KQFQEERLNGAARRLACSALIEETADYLRQRVAFGKPLLDNQYIQFKLAELKTELESLRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEHHHHHHHHHHHHH
LVHVATRAYIQGEDVVELASMAKLKAGRLSREIADWCIQFQGGMGYTWDNHANRAYRDFR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCC
LGSIGGGADEVMLQVIAKQMGLMSRHDR
CCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLYTQDHRSIMDSIRRFVAAEIDPFVDEWEAAETFPAHALFRKMGELGFLGITKPVEYGG
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCCC
LGLDFSYAVAAAEALGHARAQGVGMGIGVQTDMATPALAAFGTDALKREFLAPAIAGEMV
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHH
VSIGVSEVGAGSDVASLKTRARRDGDDYVISGSKMWITNGTQADWICLLCNTSDGPVHKN
HEECHHHCCCCCHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEEEEEECCCCCCCCC
KSLIIVPLRENGRLVRGVEVQKIRKMGMWCSDTAQIFFDDVRVPARNRIGDEGMGFIYQM
CCEEEEEECCCCCEEECCHHHHHHHHCCCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHH
KQFQEERLNGAARRLACSALIEETADYLRQRVAFGKPLLDNQYIQFKLAELKTELESLRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEHHHHHHHHHHHHH
LVHVATRAYIQGEDVVELASMAKLKAGRLSREIADWCIQFQGGMGYTWDNHANRAYRDFR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCC
LGSIGGGADEVMLQVIAKQMGLMSRHDR
CCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]