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The map label for this gene is ydiK [H]

Identifier: 94310649

GI number: 94310649

Start: 1850698

End: 1851864

Strand: Direct

Name: ydiK [H]

Synonym: Rmet_1709

Alternate gene names: 94310649

Gene position: 1850698-1851864 (Clockwise)

Preceding gene: 94310648

Following gene: 94310650

Centisome position: 47.11

GC content: 63.07

Gene sequence:

>1167_bases
ATGCTGCAAACACGTCTTTCGATCCCTACGATCTCTCGTACGCTGATCGACGTATATATCCGCTTCGGCCTGATCTTGTT
GCTGGCGATATCTTGCTTCGAGATCTTCAAGCCGTTCATCAGCCTGATGGCGTGGTCAGTGATCCTGGCGATCACGCTTT
ATCCGCTGCAGACGTACCTGCGGGGCAAGATCTTTGATGGAGAGGGCCGCACGGCCACCCTGATCGTCTTCCTGGTCATC
TGCATCATTCTCGTGCCCTCGTGCCTGCTCGGCATTGCATTGATCGACTCGGTCGAACACGCATTGGAGATCGCGCGCAG
CGGCAACATCCGGATTCCGCCACCGTCCGAATCGGTAGCGGCCTGGCCGTTTGTGGGCAAGCAACTCTACGGCTTCTGGC
ACCTGGCCTCCACCGACTTCGCCTCGCTGGCTGAAAAGCTGGCGCCACAGATCAAGGTGGTGGCGCTGGCCTTGCTCGGC
ACAGCGCGTGGCGTGGGCGTCGGGCTGCTGATCTTCGTGGCGGCGCTCATGATCGCGGGCATCTTCATGGCCTACGGCGA
ACTCGGCACGCGCAGCGCGATTCAGATTGCCTCCCGCATCTCCGGGCCAGAGCGCGGCCCCCGCCTTACCGTGCTGTGCA
CGGCCACCGTGCGCGCGGTCGCGCAGGGTGTGGTGGGCATTGCATTCATCCAGATGCTGCTGATCGGTGTCGCCTTCGTT
ATGAAGGGTGTGCCGGGGGCAGGGCTGCTGGCGCTGGCGGTGCTGCTGCTCGGCATCATGCAGTTGCCGGCCACGCTGAT
CACCATTCCCGTGATCATCTTCGTGATCGCGACCGAGGGCGTCAGCGGCATGAACATCGTCTTCGCCGTCTACGTGTTCA
TCGCCGGCCTGGCGGATAACGTGCTCAAGCCGATGCTGCTGGGCCGTGGTGTGGATGTGCCGATGCCGGTGGTGTTGATC
GGCGCGCTTGGCGGCATGGTCAGCGGAGGCGTAATCGGGCTCTTCGTCGGCCCTGTGGTGCTCGCGGTTGGATACCAATT
GTTCTGGCAGTGGGTGGAAGACACCCAGCAGCAAGCCATCGAAGGCGGCGAGGCCGTGGCGAGTGGTGAGGCCGTGGAGG
GTGGCCAGGCGTCGGGACGTACCGAAAGCGGTCCGGCTGCCGGATAG

Upstream 100 bases:

>100_bases
GTCCTGCTTGCCCTTGGCTGGAGGCGCAGGCGCCAGAGCCGGCTCGTGTGAGAGGTGGCGCGGCAAAGGCGCGCGCCAGA
GGTTCACAAGGAGGCCGCCG

Downstream 100 bases:

>100_bases
CGATGTTGCCCCAGGGCCGCGTGTTCCGTTGCTGGATGCTGGCCGCGACGATGCTCGCCGGCTGCGCGCGCGTTGGCCCG
GATTTCCAGCCGCAGCACGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MLQTRLSIPTISRTLIDVYIRFGLILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYLRGKIFDGEGRTATLIVFLVI
CIILVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVAAWPFVGKQLYGFWHLASTDFASLAEKLAPQIKVVALALLG
TARGVGVGLLIFVAALMIAGIFMAYGELGTRSAIQIASRISGPERGPRLTVLCTATVRAVAQGVVGIAFIQMLLIGVAFV
MKGVPGAGLLALAVLLLGIMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADNVLKPMLLGRGVDVPMPVVLI
GALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQAIEGGEAVASGEAVEGGQASGRTESGPAAG

Sequences:

>Translated_388_residues
MLQTRLSIPTISRTLIDVYIRFGLILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYLRGKIFDGEGRTATLIVFLVI
CIILVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVAAWPFVGKQLYGFWHLASTDFASLAEKLAPQIKVVALALLG
TARGVGVGLLIFVAALMIAGIFMAYGELGTRSAIQIASRISGPERGPRLTVLCTATVRAVAQGVVGIAFIQMLLIGVAFV
MKGVPGAGLLALAVLLLGIMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADNVLKPMLLGRGVDVPMPVVLI
GALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQAIEGGEAVASGEAVEGGQASGRTESGPAAG
>Mature_388_residues
MLQTRLSIPTISRTLIDVYIRFGLILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYLRGKIFDGEGRTATLIVFLVI
CIILVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVAAWPFVGKQLYGFWHLASTDFASLAEKLAPQIKVVALALLG
TARGVGVGLLIFVAALMIAGIFMAYGELGTRSAIQIASRISGPERGPRLTVLCTATVRAVAQGVVGIAFIQMLLIGVAFV
MKGVPGAGLLALAVLLLGIMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADNVLKPMLLGRGVDVPMPVVLI
GALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQAIEGGEAVASGEAVEGGQASGRTESGPAAG

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=333, Percent_Identity=30.3303303303303, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40665; Mature: 40665

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQTRLSIPTISRTLIDVYIRFGLILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGKIFDGEGRTATLIVFLVICIILVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVA
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCE
AWPFVGKQLYGFWHLASTDFASLAEKLAPQIKVVALALLGTARGVGVGLLIFVAALMIAG
ECHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IFMAYGELGTRSAIQIASRISGPERGPRLTVLCTATVRAVAQGVVGIAFIQMLLIGVAFV
HHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKGVPGAGLLALAVLLLGIMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADN
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLKPMLLGRGVDVPMPVVLIGALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQAI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGGEAVASGEAVEGGQASGRTESGPAAG
CCCCHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLQTRLSIPTISRTLIDVYIRFGLILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGKIFDGEGRTATLIVFLVICIILVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVA
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCE
AWPFVGKQLYGFWHLASTDFASLAEKLAPQIKVVALALLGTARGVGVGLLIFVAALMIAG
ECHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IFMAYGELGTRSAIQIASRISGPERGPRLTVLCTATVRAVAQGVVGIAFIQMLLIGVAFV
HHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKGVPGAGLLALAVLLLGIMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADN
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VLKPMLLGRGVDVPMPVVLIGALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQAI
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGGEAVASGEAVEGGQASGRTESGPAAG
CCCCHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]