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The map label for this gene is ykgD [C]

Identifier: 94310546

GI number: 94310546

Start: 1730582

End: 1731532

Strand: Direct

Name: ykgD [C]

Synonym: Rmet_1604

Alternate gene names: 94310546

Gene position: 1730582-1731532 (Clockwise)

Preceding gene: 94310544

Following gene: 94310547

Centisome position: 44.06

GC content: 68.77

Gene sequence:

>951_bases
ATGGACAGCCTTAGCGAACTCGTGCGCCTGCTGGCCCCAGCCGGCACGGTGGACCTCCATTGCCGCGTGGCGGGCGCGTG
GTCGGCCCACAATGAACAGGCGCCACCCGGTCACGTGCCGTACCACGTGATCCTGGATGGGCAGGCCAGCGTGCAGGTGG
GCAAGGAGACGCTGCAGGTTGGCATGGGCGATGTGCTGCTGTTTCCGCACGGCGCCGCCCATACGTTGCATGGCATGCAG
GGCGGCCGGCGCAGGGCAGCGGAGTCGCGACAGTTCAACGGGGTGGTGACGGAAGTGTCGGTACCGGGCGCGGCGGCGCC
GCTCGACATCCTGTGCGGCACGTTCGTGCTTGGCAGCGCGTCCAAGGTTCTGCTGAGCGCGTTGCCAGAGATGCTGTGCG
TCGGCACAAGAGGCAACGGCGATGGTGAAGGTGAGGGCGGCGCGGACGATCTGGCCTGGCTGCGCGGCCTGATCGGCATG
ATGCATGCAGAAGCGGAGCGCCCCGGCCCGGGTAGCGCTGCGATCATCGCCGATCTCTCGACCGCGCTGTTCACCGTGCT
GCTGCGCACGCTGATCGCCCAAGGGGGTGTTTCGCAGGGCGTCATTGCCTTGATGGCCGACCCTCGGATGGCGCGCGCCG
TCGACGCTGTGGTCCGGGCGCCCGAGAAGCCGTGGACTCTCGACAGTCTCGCTCAGGTTTGCAACGTGTCACGCGCCACG
CTGGCGCGTCGCTTCTCGCAACTGGGCATGACGCCGCTGGAACTGGTGACGACGTTGCGCATGGAACGCGCCGCGCGGCT
GCTGCGTCAGGATGGCCTGTCGGCGGCGGCCGTGGCTGAACAGTGCGGATATGCGTCGCAGGCGGCGTTTGGCCGTGTTT
TCGCGCAGCAGTTCGGCATCGGGCCGGGCGCATACCGGCGGCAGCATCGCGCGCTGCGCCATGGCGCCTGA

Upstream 100 bases:

>100_bases
GCAGCGCTTCCATGGACTCCATGGTAGGTGCGAGTGCGATTCGGATGGATTAGAATCGGCTCATCTTTTTGCTCGATCGT
CTCACGTCGGGGTGTGCTCC

Downstream 100 bases:

>100_bases
GACCCTACTACCGATGATTTGACACCAACTGGATTGACGAATGCCCTCCGCGACCAGACCCAATGAAAACTGGGACGACT
ACCGGTACTTCCTGGCCGTT

Product: putative AraC-type DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MDSLSELVRLLAPAGTVDLHCRVAGAWSAHNEQAPPGHVPYHVILDGQASVQVGKETLQVGMGDVLLFPHGAAHTLHGMQ
GGRRRAAESRQFNGVVTEVSVPGAAAPLDILCGTFVLGSASKVLLSALPEMLCVGTRGNGDGEGEGGADDLAWLRGLIGM
MHAEAERPGPGSAAIIADLSTALFTVLLRTLIAQGGVSQGVIALMADPRMARAVDAVVRAPEKPWTLDSLAQVCNVSRAT
LARRFSQLGMTPLELVTTLRMERAARLLRQDGLSAAAVAEQCGYASQAAFGRVFAQQFGIGPGAYRRQHRALRHGA

Sequences:

>Translated_316_residues
MDSLSELVRLLAPAGTVDLHCRVAGAWSAHNEQAPPGHVPYHVILDGQASVQVGKETLQVGMGDVLLFPHGAAHTLHGMQ
GGRRRAAESRQFNGVVTEVSVPGAAAPLDILCGTFVLGSASKVLLSALPEMLCVGTRGNGDGEGEGGADDLAWLRGLIGM
MHAEAERPGPGSAAIIADLSTALFTVLLRTLIAQGGVSQGVIALMADPRMARAVDAVVRAPEKPWTLDSLAQVCNVSRAT
LARRFSQLGMTPLELVTTLRMERAARLLRQDGLSAAAVAEQCGYASQAAFGRVFAQQFGIGPGAYRRQHRALRHGA
>Mature_316_residues
MDSLSELVRLLAPAGTVDLHCRVAGAWSAHNEQAPPGHVPYHVILDGQASVQVGKETLQVGMGDVLLFPHGAAHTLHGMQ
GGRRRAAESRQFNGVVTEVSVPGAAAPLDILCGTFVLGSASKVLLSALPEMLCVGTRGNGDGEGEGGADDLAWLRGLIGM
MHAEAERPGPGSAAIIADLSTALFTVLLRTLIAQGGVSQGVIALMADPRMARAVDAVVRAPEKPWTLDSLAQVCNVSRAT
LARRFSQLGMTPLELVTTLRMERAARLLRQDGLSAAAVAEQCGYASQAAFGRVFAQQFGIGPGAYRRQHRALRHGA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=314, Percent_Identity=28.6624203821656, Blast_Score=149, Evalue=2e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33116; Mature: 33116

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSLSELVRLLAPAGTVDLHCRVAGAWSAHNEQAPPGHVPYHVILDGQASVQVGKETLQV
CCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
GMGDVLLFPHGAAHTLHGMQGGRRRAAESRQFNGVVTEVSVPGAAAPLDILCGTFVLGSA
CCCCEEEECCCHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCH
SKVLLSALPEMLCVGTRGNGDGEGEGGADDLAWLRGLIGMMHAEAERPGPGSAAIIADLS
HHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TALFTVLLRTLIAQGGVSQGVIALMADPRMARAVDAVVRAPEKPWTLDSLAQVCNVSRAT
HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHH
LARRFSQLGMTPLELVTTLRMERAARLLRQDGLSAAAVAEQCGYASQAAFGRVFAQQFGI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
GPGAYRRQHRALRHGA
CCHHHHHHHHHHHCCC
>Mature Secondary Structure
MDSLSELVRLLAPAGTVDLHCRVAGAWSAHNEQAPPGHVPYHVILDGQASVQVGKETLQV
CCHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
GMGDVLLFPHGAAHTLHGMQGGRRRAAESRQFNGVVTEVSVPGAAAPLDILCGTFVLGSA
CCCCEEEECCCHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCH
SKVLLSALPEMLCVGTRGNGDGEGEGGADDLAWLRGLIGMMHAEAERPGPGSAAIIADLS
HHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TALFTVLLRTLIAQGGVSQGVIALMADPRMARAVDAVVRAPEKPWTLDSLAQVCNVSRAT
HHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHH
LARRFSQLGMTPLELVTTLRMERAARLLRQDGLSAAAVAEQCGYASQAAFGRVFAQQFGI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
GPGAYRRQHRALRHGA
CCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]