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The map label for this gene is yafC [H]

Identifier: 94310547

GI number: 94310547

Start: 1731573

End: 1732490

Strand: Direct

Name: yafC [H]

Synonym: Rmet_1605

Alternate gene names: 94310547

Gene position: 1731573-1732490 (Clockwise)

Preceding gene: 94310546

Following gene: 94310548

Centisome position: 44.08

GC content: 65.03

Gene sequence:

>918_bases
ATGCCCTCCGCGACCAGACCCAATGAAAACTGGGACGACTACCGGTACTTCCTGGCCGTTGCCCGATCGGGCACGCTCTC
CGCGGCTGCCGAGCAACTCGGCACAGAGCACACGACGGTGGCACGCCATATCCACGCACTTGAGCGGACCCTCAATACGC
GCCTGTTTCACAAGAGCCATACGGGCTATGCGCTGACCGATGCGGGCGAGCGACTGCTGGCCACCGCCGAGACGATCGAA
GGCGCGCTACTTGCCTCGAAGGCTGCGGCGGCAGGCGAGCAGGAGATCGCCGGCATCGTGCGGATCGGCGCGCCCGACGG
CTTCGGCAGCATGTTCCTGGCGCCGCGCATCCATGCGCTGACCGAACGGCACCCCAGGCTCGAGGTGGAAATCTTCGCCG
CCGCCCGGATCTTCAGCCTGACCCGTCGCGAAGCCGATATCGCCATCGGCCTGTCGGGCGCGGAGCATCTGCGTGTGGCG
TCGCACCGACTGACCGACTACCGTATGTTCGTCTACGGAACGAAGTCGTACCTGAAGCGCGCTGCGCAGATTCGTACCAA
GGCAGACCTCGCGCAGCATCCCTTCGTCGGCTACGTGGAGGAATTGCTGTTCTCGCCCGAGTTAAGCTTTTCCGGCGCGG
TCGGCGTCGAGCTTCCGGCGCGTGTGCGCTGCACGAACCTGCTGACCCAGGTTCACGCCACGCTCTCCGGACATTGCCTC
TGCATTATCCCGGCCTACGTGGCGGCGGATTTCCCCGCGCTGGTGCCGGTGCTGCCCGATGCCGTGGCCGTGACGCGTAC
ATTCCACATGCACGTTCACGAGGACCACTGGAAATCGGCGCATGTGCGTGCCGTGGCCAACTTTATCGCCGAGGAAGTCG
AGGCGAATACCGGGCTGTTCCTCGACGGTACGGGCTGA

Upstream 100 bases:

>100_bases
TTCGGCATCGGGCCGGGCGCATACCGGCGGCAGCATCGCGCGCTGCGCCATGGCGCCTGAGACCCTACTACCGATGATTT
GACACCAACTGGATTGACGA

Downstream 100 bases:

>100_bases
TCGGTCACTGTAGTGAAAGGGTGAGGTTGTGCATCTTTGCACAACCGATGCGGATTTGCGGCCTGTCGTTGTGCACGATC
TCGGCGAATAATTGCCGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MPSATRPNENWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSHTGYALTDAGERLLATAETIE
GALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHALTERHPRLEVEIFAAARIFSLTRREADIAIGLSGAEHLRVA
SHRLTDYRMFVYGTKSYLKRAAQIRTKADLAQHPFVGYVEELLFSPELSFSGAVGVELPARVRCTNLLTQVHATLSGHCL
CIIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFIAEEVEANTGLFLDGTG

Sequences:

>Translated_305_residues
MPSATRPNENWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSHTGYALTDAGERLLATAETIE
GALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHALTERHPRLEVEIFAAARIFSLTRREADIAIGLSGAEHLRVA
SHRLTDYRMFVYGTKSYLKRAAQIRTKADLAQHPFVGYVEELLFSPELSFSGAVGVELPARVRCTNLLTQVHATLSGHCL
CIIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFIAEEVEANTGLFLDGTG
>Mature_304_residues
PSATRPNENWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSHTGYALTDAGERLLATAETIEG
ALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHALTERHPRLEVEIFAAARIFSLTRREADIAIGLSGAEHLRVAS
HRLTDYRMFVYGTKSYLKRAAQIRTKADLAQHPFVGYVEELLFSPELSFSGAVGVELPARVRCTNLLTQVHATLSGHCLC
IIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFIAEEVEANTGLFLDGTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=28.0405405405405, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789440, Length=182, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081978, Length=164, Percent_Identity=32.3170731707317, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788706, Length=179, Percent_Identity=25.6983240223464, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33281; Mature: 33150

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSATRPNENWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSH
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCC
TGYALTDAGERLLATAETIEGALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHAL
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEEECCCCCCCCHHHHHHHHHH
TERHPRLEVEIFAAARIFSLTRREADIAIGLSGAEHLRVASHRLTDYRMFVYGTKSYLKR
HCCCCCEEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEEEECHHHHHH
AAQIRTKADLAQHPFVGYVEELLFSPELSFSGAVGVELPARVRCTNLLTQVHATLSGHCL
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
CIIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFIAEEVEANTGLF
EEEHHHHHCCCCHHHHHCCCHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEE
LDGTG
EECCC
>Mature Secondary Structure 
PSATRPNENWDDYRYFLAVARSGTLSAAAEQLGTEHTTVARHIHALERTLNTRLFHKSH
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCC
TGYALTDAGERLLATAETIEGALLASKAAAAGEQEIAGIVRIGAPDGFGSMFLAPRIHAL
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEEECCCCCCCCHHHHHHHHHH
TERHPRLEVEIFAAARIFSLTRREADIAIGLSGAEHLRVASHRLTDYRMFVYGTKSYLKR
HCCCCCEEEEEEHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCEEEEEEEECHHHHHH
AAQIRTKADLAQHPFVGYVEELLFSPELSFSGAVGVELPARVRCTNLLTQVHATLSGHCL
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
CIIPAYVAADFPALVPVLPDAVAVTRTFHMHVHEDHWKSAHVRAVANFIAEEVEANTGLF
EEEHHHHHCCCCHHHHHCCCHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEE
LDGTG
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]