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The map label for this gene is hypD2 [H]

Identifier: 94310481

GI number: 94310481

Start: 1659525

End: 1660667

Strand: Direct

Name: hypD2 [H]

Synonym: Rmet_1539

Alternate gene names: 94310481

Gene position: 1659525-1660667 (Clockwise)

Preceding gene: 94310480

Following gene: 94310482

Centisome position: 42.25

GC content: 66.75

Gene sequence:

>1143_bases
ATGAAATACGTGGACGAATTCCGGGACGGCGAGCTGGCCCGTACCCTGGCGGCGAAGATCGCCCGCGACGCCGACTCCGG
GCGCAGCTACAGTTTCATGGAGTTCTGCGGCGGCCACACCCACGCCATCTCCCGCTACGGTGTCAGCGATCTGTTGCCCG
CCAACGTGCGCATGATCCACGGCCCCGGCTGCCCGGTGTGCGTGCTGCCCATCGGCCGCATCGATCTCGCCATCAAGCTC
GCGTTGGAGCGTGGTGTGATCCTCTGCTCCTATGGCGACACGCTGCGCATCCCCGCCTCCGAGAGCCTGTCGCTGCTCAA
GGCCAAGGCCCGCGGTGCGGACATCCGCATGGTCTACTCGGCGGCCGACGCGCTGGCCATCGCCCAGCAGAATCCCCAGC
GCGAAGTGGTGTTTTTCGCCATCGGCTTCGAGACCACCACGCCGCCCACCGCGCTGGTGATCAAGCAGGCCGAGGCGGCC
CGCGTCACCAACTTCAGTGTGCTGTGCAACCACGTGCTGACGCCTTCGGCCATCATCACCATCCTCGAGTCGCCGGAGGT
GCGCAAGCTGGGTACCGTGCCGCTGGACGGCTTCGTCGGCCCCGCCCATGTCAGCACCGTGATCGGCAGTCGGCCCTACG
AATTCTTCGCCGAGGAGTACCGCAAGCCGGTGGTGATCGCCGGCTTCGAGCCGCTGGACGTGATGCAGGCCATCCTCATG
CTGGTGACGCAGGTCAACGAGGGCAGAGCCGAGGTGGAGAATGAATTCACTCGCGCCGTCACCCGAGACGGCAACCAGAA
GGCCCAGGCCTTGGTGTCGGAAGTCTTCGAGCTGCGCTGCTCCTTCGAATGGCGCGGCCTGGGCGAGGTGCCCTACAGCG
CCCTGCGCATCCGCGCCAGCTACCGCCTGTTCGACGCCGAGGCCCGCTTCGGCCTCGCCTACCGGCCGGTGCCCGACAAC
AAGGCCTGCGAATGCGGCGCCATCCTGCGCGGCGTGAAGAAGCCCACCGACTGCAAGCTCTTCGCCACCGCGTGCACGCC
GGAGAATCCGATGGGCTCCTGCATGGTGTCGAGCGAAGGGGCGTGCGCGGCGCATTACAGCTACGGGCGGTTCAAGGACA
TCGAAGTGGTGGTGGCAGCTTGA

Upstream 100 bases:

>100_bases
TGCACGTGGGCTACGCACTGACGAAGCTGGATCCCGAAGAGGCGGAACGCACCCTGAAGCTGTTCGCCGAAGCCGGCATG
GTGCAGACGGAGGGTGCGTC

Downstream 100 bases:

>100_bases
TGAATTTAACCGCAGAGACGCAGAGGCGCAGAGTTTTCTCCGTGTCTCGGCGCCTCTGCGGTGAGGATCGACGATGAGCG
AAGTGAAGAAAGGCTATATC

Product: hydrogenase isoenzymes formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKYVDEFRDGELARTLAAKIARDADSGRSYSFMEFCGGHTHAISRYGVSDLLPANVRMIHGPGCPVCVLPIGRIDLAIKL
ALERGVILCSYGDTLRIPASESLSLLKAKARGADIRMVYSAADALAIAQQNPQREVVFFAIGFETTTPPTALVIKQAEAA
RVTNFSVLCNHVLTPSAIITILESPEVRKLGTVPLDGFVGPAHVSTVIGSRPYEFFAEEYRKPVVIAGFEPLDVMQAILM
LVTQVNEGRAEVENEFTRAVTRDGNQKAQALVSEVFELRCSFEWRGLGEVPYSALRIRASYRLFDAEARFGLAYRPVPDN
KACECGAILRGVKKPTDCKLFATACTPENPMGSCMVSSEGACAAHYSYGRFKDIEVVVAA

Sequences:

>Translated_380_residues
MKYVDEFRDGELARTLAAKIARDADSGRSYSFMEFCGGHTHAISRYGVSDLLPANVRMIHGPGCPVCVLPIGRIDLAIKL
ALERGVILCSYGDTLRIPASESLSLLKAKARGADIRMVYSAADALAIAQQNPQREVVFFAIGFETTTPPTALVIKQAEAA
RVTNFSVLCNHVLTPSAIITILESPEVRKLGTVPLDGFVGPAHVSTVIGSRPYEFFAEEYRKPVVIAGFEPLDVMQAILM
LVTQVNEGRAEVENEFTRAVTRDGNQKAQALVSEVFELRCSFEWRGLGEVPYSALRIRASYRLFDAEARFGLAYRPVPDN
KACECGAILRGVKKPTDCKLFATACTPENPMGSCMVSSEGACAAHYSYGRFKDIEVVVAA
>Mature_380_residues
MKYVDEFRDGELARTLAAKIARDADSGRSYSFMEFCGGHTHAISRYGVSDLLPANVRMIHGPGCPVCVLPIGRIDLAIKL
ALERGVILCSYGDTLRIPASESLSLLKAKARGADIRMVYSAADALAIAQQNPQREVVFFAIGFETTTPPTALVIKQAEAA
RVTNFSVLCNHVLTPSAIITILESPEVRKLGTVPLDGFVGPAHVSTVIGSRPYEFFAEEYRKPVVIAGFEPLDVMQAILM
LVTQVNEGRAEVENEFTRAVTRDGNQKAQALVSEVFELRCSFEWRGLGEVPYSALRIRASYRLFDAEARFGLAYRPVPDN
KACECGAILRGVKKPTDCKLFATACTPENPMGSCMVSSEGACAAHYSYGRFKDIEVVVAA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=374, Percent_Identity=46.524064171123, Blast_Score=350, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41396; Mature: 41396

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVDEFRDGELARTLAAKIARDADSGRSYSFMEFCGGHTHAISRYGVSDLLPANVRMIH
CCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHHHHHCCHHHCCCCCEEEEE
GPGCPVCVLPIGRIDLAIKLALERGVILCSYGDTLRIPASESLSLLKAKARGADIRMVYS
CCCCCEEEEECCCEEEEEEEEECCCEEEEECCCEEECCCCHHHHHHHHHCCCCCEEEEEE
AADALAIAQQNPQREVVFFAIGFETTTPPTALVIKQAEAARVTNFSVLCNHVLTPSAIIT
HHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEE
ILESPEVRKLGTVPLDGFVGPAHVSTVIGSRPYEFFAEEYRKPVVIAGFEPLDVMQAILM
EECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHH
LVTQVNEGRAEVENEFTRAVTRDGNQKAQALVSEVFELRCSFEWRGLGEVPYSALRIRAS
HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEH
YRLFDAEARFGLAYRPVPDNKACECGAILRGVKKPTDCKLFATACTPENPMGSCMVSSEG
EEEEECCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEECCCC
ACAAHYSYGRFKDIEVVVAA
CEEEECCCCCCCCEEEEEEC
>Mature Secondary Structure
MKYVDEFRDGELARTLAAKIARDADSGRSYSFMEFCGGHTHAISRYGVSDLLPANVRMIH
CCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHHHHHCCHHHCCCCCEEEEE
GPGCPVCVLPIGRIDLAIKLALERGVILCSYGDTLRIPASESLSLLKAKARGADIRMVYS
CCCCCEEEEECCCEEEEEEEEECCCEEEEECCCEEECCCCHHHHHHHHHCCCCCEEEEEE
AADALAIAQQNPQREVVFFAIGFETTTPPTALVIKQAEAARVTNFSVLCNHVLTPSAIIT
HHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEE
ILESPEVRKLGTVPLDGFVGPAHVSTVIGSRPYEFFAEEYRKPVVIAGFEPLDVMQAILM
EECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHH
LVTQVNEGRAEVENEFTRAVTRDGNQKAQALVSEVFELRCSFEWRGLGEVPYSALRIRAS
HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEH
YRLFDAEARFGLAYRPVPDNKACECGAILRGVKKPTDCKLFATACTPENPMGSCMVSSEG
EEEEECCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEECCCC
ACAAHYSYGRFKDIEVVVAA
CEEEECCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]