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The map label for this gene is virD2

Identifier: 94310431

GI number: 94310431

Start: 1608307

End: 1610409

Strand: Direct

Name: virD2

Synonym: Rmet_1489

Alternate gene names: NA

Gene position: 1608307-1610409 (Clockwise)

Preceding gene: 94310430

Following gene: 94310433

Centisome position: 40.94

GC content: 69.71

Gene sequence:

>2103_bases
ATGGGGGTGGCGCGGCACGCAGCGGCTTCGCCACCGTGCCGCTTGGGACGCGAGGCCCGCGCCGATGCGGGCATGTCCGC
GTGCTTTGCACGACCAGACACGCCGGAGCTTGCAGGGAGCACAGCCATGACCGACCGCCGCGACGACGATTTCCGCATCC
GCCCCGGCGCCCCGAAGAACCGGGGCCAGGGCTTCGTCTCCAAGGTGCTCAAGCAGGCGAGCAAGGCCAGCGGCGGCAAG
TCCTCGGTGCGCCGTCCAGGCGGCAGTGGCAAGGGCGCTGGCACTGGCCAGCGGCCCGGCTCACGCCTGGGGCGCGGCCA
CACGGCGGCGCGCTTCGCGGGAGCGAAGCTGACGCCCATGTCGCGGCGCGTGACCATCAAGACGCTGCTGGTCAACCAGC
AGCGGGCCAGCCCGCAGTCGCTCGCCAAGCACCTGCGCTACATCGAGCGCGATGGCGTGGGCCGCGATGGCGAGCCGGGC
CAAGCCTACGGGCCGCAGACTGATGCCGCCGACCTCGATGCCTTCAAGGAACGCTGCGCCGACGACCGGCACCATTTCCG
CTTCATCCTCTCGCCCGAGGATGGCGCGGAGCTGGAAGACCTGCGCACCTACACGCGCCACCTGATGGGCCGCATGGAGG
CCGACCTGGGGACGCGGCTGGATTGGGTGGCAGTCGATCACTGGAACACCGACAACCCGCACACACACCTGATCGTGCGC
GGGCGCGACGACACCTGCAAGGACCTCATCATCGCGGGGGACTACATCGCCGATGGCTTCCGTCATCGCGCCGCCGAACT
GGCGACCGAATGGCTGGGGCCACGCACCGAGCTGGAGATCCAGCAGACCTTGCAGCGCGAGGTGGAGCAGGAGCGATGGA
CGAGCCTGGATCGCACGCTCAAGCGCGAACTGGGCGACGATGGCCTGGTGCATGTCGAACGGCTCAACGAGCCGAGGTTG
CAACGCCAGCGCCTGCTGCTGGTCGGCCGCCTGCAACGCTTGCAGCGCCTGGGCCTGGCCGACGAGATGCAGCCGGGCAC
CTGGGCCGTCCATTCCAATGCGGAGAAAACCCTGCGCGCCCTGGGCGAGCGTGGCGACATCATCCGCACCATGCAGCGGG
CCATGCGCGGCGAGCCGCGCGAGCTGGCGGTGTTCGAGCCGGGCGACGACGGCCGCAGCATCGTCGGCCGCGTGGCCGCG
AAGGGGCTGACCGACGAGCTGCGCGACCGCGGCTATCTGGTCATCGACGGTGTGGACGGCAAGGCCCACTACGCTGCGCT
CAACGCCCGCGACGAACTGGCGAACTATCCCACCGGCGCCGTGGTGGAGGTGAAGGGATCGGCCGACGTGCGCGCGGCCG
ACCGGAACATTGCCGCACTGGCGAGCGATGGCCTGTACCGCACCGATCATCACCTTGCCATCGCGCAGGGTCAGGCTGTG
CCCGGCCGCGATCCGCAGGAAGTCGTCGCGGCCCATGTCCGCCGGCTGGAAGCCCTGCGCCGCGCAGGCATCGTGGAGCG
CGTGGCCGAAGGGCTATGGAAGGTGCCGGACGACCTGCCCGAACACGGCCGCCGCTACGACGCGCAGCGCCTGGGCGGCG
TGGCGGTGGAACTGAAATCGCACCTGCCCATCGAGCGGCAGGCCCGCGTGATCGGGGCCACCTGGCTCGACCAGCAACTG
ATCGGCGGCGGCTCGGGCCTGGGCGACCTCGGCTTTGGCGGTGAGGTCAAACAGGCGATGCAGCAGCGCGCAGATTTCCT
GGCGGAACAGGGGCTAGCCGAGCGGCGCGGGCAGCGCCTGATCCTCGCTCGGAACCTGCTGAGCACCTTGCGCAATCGGG
AACTGGCGCAGGCCGCGAAGGACATTGCCGCCGACACCGGCCTGGAGCATCGGCCCGTGTCCGACGGCCAGCGCGTGGCT
GGCATCTACCGGCGCTCCGTCATGCTCGCCAGCGGACGCTACGCCATGCTCGATGACGGCATGGGGTTCAGCCTGGTGCC
GTGGAAACCAATAATCGAACAAAGGCTGGGACAGCAACTCACCGCCACCGTGCGCAACGGTGGAGTGTCTTGGGGATTTG
GCCGGGAGCGTGGTTTAGCGTGA

Upstream 100 bases:

>100_bases
CGCCGCCGGGCCGCCGCTGCCCGGAGCGTCAGCGAGGAGCAAAGGCGGAAGGCAAGACAAAAGGGGGCGGCACCTGTCGG
GCCGCAAAGCCAGTCTGCAC

Downstream 100 bases:

>100_bases
CGTAAGCATCAATCAGCATCTTCGCGCAGCGGATTTCTGATGGATCTAAGGGAGAACTGCTTCGGTGTGACGCCGAAAGT
TGCACTGAATTTATCTATGA

Product: relaxase type IV secretory pathway VirD2

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 700; Mature: 699

Protein sequence:

>700_residues
MGVARHAAASPPCRLGREARADAGMSACFARPDTPELAGSTAMTDRRDDDFRIRPGAPKNRGQGFVSKVLKQASKASGGK
SSVRRPGGSGKGAGTGQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPG
QAYGPQTDAADLDAFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTRLDWVAVDHWNTDNPHTHLIVR
GRDDTCKDLIIAGDYIADGFRHRAAELATEWLGPRTELEIQQTLQREVEQERWTSLDRTLKRELGDDGLVHVERLNEPRL
QRQRLLLVGRLQRLQRLGLADEMQPGTWAVHSNAEKTLRALGERGDIIRTMQRAMRGEPRELAVFEPGDDGRSIVGRVAA
KGLTDELRDRGYLVIDGVDGKAHYAALNARDELANYPTGAVVEVKGSADVRAADRNIAALASDGLYRTDHHLAIAQGQAV
PGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPEHGRRYDAQRLGGVAVELKSHLPIERQARVIGATWLDQQL
IGGGSGLGDLGFGGEVKQAMQQRADFLAEQGLAERRGQRLILARNLLSTLRNRELAQAAKDIAADTGLEHRPVSDGQRVA
GIYRRSVMLASGRYAMLDDGMGFSLVPWKPIIEQRLGQQLTATVRNGGVSWGFGRERGLA

Sequences:

>Translated_700_residues
MGVARHAAASPPCRLGREARADAGMSACFARPDTPELAGSTAMTDRRDDDFRIRPGAPKNRGQGFVSKVLKQASKASGGK
SSVRRPGGSGKGAGTGQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPG
QAYGPQTDAADLDAFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTRLDWVAVDHWNTDNPHTHLIVR
GRDDTCKDLIIAGDYIADGFRHRAAELATEWLGPRTELEIQQTLQREVEQERWTSLDRTLKRELGDDGLVHVERLNEPRL
QRQRLLLVGRLQRLQRLGLADEMQPGTWAVHSNAEKTLRALGERGDIIRTMQRAMRGEPRELAVFEPGDDGRSIVGRVAA
KGLTDELRDRGYLVIDGVDGKAHYAALNARDELANYPTGAVVEVKGSADVRAADRNIAALASDGLYRTDHHLAIAQGQAV
PGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPEHGRRYDAQRLGGVAVELKSHLPIERQARVIGATWLDQQL
IGGGSGLGDLGFGGEVKQAMQQRADFLAEQGLAERRGQRLILARNLLSTLRNRELAQAAKDIAADTGLEHRPVSDGQRVA
GIYRRSVMLASGRYAMLDDGMGFSLVPWKPIIEQRLGQQLTATVRNGGVSWGFGRERGLA
>Mature_699_residues
GVARHAAASPPCRLGREARADAGMSACFARPDTPELAGSTAMTDRRDDDFRIRPGAPKNRGQGFVSKVLKQASKASGGKS
SVRRPGGSGKGAGTGQRPGSRLGRGHTAARFAGAKLTPMSRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGQ
AYGPQTDAADLDAFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTRLDWVAVDHWNTDNPHTHLIVRG
RDDTCKDLIIAGDYIADGFRHRAAELATEWLGPRTELEIQQTLQREVEQERWTSLDRTLKRELGDDGLVHVERLNEPRLQ
RQRLLLVGRLQRLQRLGLADEMQPGTWAVHSNAEKTLRALGERGDIIRTMQRAMRGEPRELAVFEPGDDGRSIVGRVAAK
GLTDELRDRGYLVIDGVDGKAHYAALNARDELANYPTGAVVEVKGSADVRAADRNIAALASDGLYRTDHHLAIAQGQAVP
GRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPEHGRRYDAQRLGGVAVELKSHLPIERQARVIGATWLDQQLI
GGGSGLGDLGFGGEVKQAMQQRADFLAEQGLAERRGQRLILARNLLSTLRNRELAQAAKDIAADTGLEHRPVSDGQRVAG
IYRRSVMLASGRYAMLDDGMGFSLVPWKPIIEQRLGQQLTATVRNGGVSWGFGRERGLA

Specific function: Unknown

COG id: COG3843

COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76909; Mature: 76778

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVARHAAASPPCRLGREARADAGMSACFARPDTPELAGSTAMTDRRDDDFRIRPGAPKN
CCCCCCCCCCCCHHCCCHHHHCCCCHHHCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCC
RGQGFVSKVLKQASKASGGKSSVRRPGGSGKGAGTGQRPGSRLGRGHTAARFAGAKLTPM
CCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCC
SRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGQAYGPQTDAADLDAFKERCA
CCCEEEHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
DDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTRLDWVAVDHWNTDNPHTHLIVR
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEE
GRDDTCKDLIIAGDYIADGFRHRAAELATEWLGPRTELEIQQTLQREVEQERWTSLDRTL
CCCCCCHHHEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KRELGDDGLVHVERLNEPRLQRQRLLLVGRLQRLQRLGLADEMQPGTWAVHSNAEKTLRA
HHHCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHH
LGERGDIIRTMQRAMRGEPRELAVFEPGDDGRSIVGRVAAKGLTDELRDRGYLVIDGVDG
HHCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHCCCEEEEECCCC
KAHYAALNARDELANYPTGAVVEVKGSADVRAADRNIAALASDGLYRTDHHLAIAQGQAV
CCCEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCEECCCEEEEECCCCC
PGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPEHGRRYDAQRLGGVAVELKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCEEEEHHH
HLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEVKQAMQQRADFLAEQGLAERRGQRL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCEE
ILARNLLSTLRNRELAQAAKDIAADTGLEHRPVSDGQRVAGIYRRSVMLASGRYAMLDDG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCEEEEECC
MGFSLVPWKPIIEQRLGQQLTATVRNGGVSWGFGRERGLA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCC
>Mature Secondary Structure 
GVARHAAASPPCRLGREARADAGMSACFARPDTPELAGSTAMTDRRDDDFRIRPGAPKN
CCCCCCCCCCCHHCCCHHHHCCCCHHHCCCCCCHHHCCCCCCCCCCCCCEEECCCCCCC
RGQGFVSKVLKQASKASGGKSSVRRPGGSGKGAGTGQRPGSRLGRGHTAARFAGAKLTPM
CCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCC
SRRVTIKTLLVNQQRASPQSLAKHLRYIERDGVGRDGEPGQAYGPQTDAADLDAFKERCA
CCCEEEHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
DDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTRLDWVAVDHWNTDNPHTHLIVR
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEE
GRDDTCKDLIIAGDYIADGFRHRAAELATEWLGPRTELEIQQTLQREVEQERWTSLDRTL
CCCCCCHHHEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KRELGDDGLVHVERLNEPRLQRQRLLLVGRLQRLQRLGLADEMQPGTWAVHSNAEKTLRA
HHHCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHH
LGERGDIIRTMQRAMRGEPRELAVFEPGDDGRSIVGRVAAKGLTDELRDRGYLVIDGVDG
HHCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHCCCEEEEECCCC
KAHYAALNARDELANYPTGAVVEVKGSADVRAADRNIAALASDGLYRTDHHLAIAQGQAV
CCCEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCEECCCEEEEECCCCC
PGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDLPEHGRRYDAQRLGGVAVELKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCEEEEHHH
HLPIERQARVIGATWLDQQLIGGGSGLGDLGFGGEVKQAMQQRADFLAEQGLAERRGQRL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCEE
ILARNLLSTLRNRELAQAAKDIAADTGLEHRPVSDGQRVAGIYRRSVMLASGRYAMLDDG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCEEEEECC
MGFSLVPWKPIIEQRLGQQLTATVRNGGVSWGFGRERGLA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA