Click here to switch to the map view.

The map label for this gene is traF [H]

Identifier: 94310430

GI number: 94310430

Start: 1607397

End: 1607984

Strand: Direct

Name: traF [H]

Synonym: Rmet_1488

Alternate gene names: 94310430

Gene position: 1607397-1607984 (Clockwise)

Preceding gene: 335055529

Following gene: 94310431

Centisome position: 40.92

GC content: 70.07

Gene sequence:

>588_bases
ATGACCGCCGTTTCCCCTGCCGACACCGCGCCGCGTCCTCGCTCGCGCCTACACGCTCGCATCGTGCTGGCGGGCCTGTC
CGCCTGCGGCCTCGCTGCGCTGGCCTGGGCGTCCTTCGTGCATCCACTGCCGCGCCTAACCTACAACCCGTCCGACAGCG
TGGCGGTAGGCTGGTATCGCGTCGATCCACTCGACCACCGCGCCAGCTCGCCGCCTCGTCCGTTGTCCGTGGGCAGCATC
GTGCTGGTTCCACTGCCTGCCGAAGCCGCAGCACTCGCTGCGCAGCGCGGCTACCTGCCGACGCGCATCCCGCTGCTCAA
GCGCGTCGGCGCGGTCGCGCCGCAGGAGGTGTGCATCGCTGACGGCAGCGTCCGCATCGACGGCGTGCCTTCGGCCGCCG
TGTTGCCTGCTGACCGGCTGGGACGGCCGCTGCCATCCTGGCAGCAGTGCCGCCGCCTTCGGTCTGGCGAGCTGTTCCTG
CTCAGTGTCATCAATCCGGCGTCGTTCGACAGCCGGTATTTTGGGCCGGTCAGCGCCGCCACCGTGATCGGCGTTGCACG
TCCGATCTGGCTGGAGTCACGCCCATGA

Upstream 100 bases:

>100_bases
CGTACTGGCGCACGCTTGCCAACCGGCTCGCTGCGCGCCTGCCGCTGCCCGAATACACCGCCGAGCGGCACGCCGCATGG
CTGATCGGGAAGGAACTGCC

Downstream 100 bases:

>100_bases
TCGCCGCCGATTCGCTGCGCATCATCGTGCTATCGGGCGTGTCGTTCTGTTGGCCGTCGCCGTGTCGTCGCGCGTGCAGT
GCGGGTGCCAATCCTGCGCA

Product: plasmid conjugal transfer transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MTAVSPADTAPRPRSRLHARIVLAGLSACGLAALAWASFVHPLPRLTYNPSDSVAVGWYRVDPLDHRASSPPRPLSVGSI
VLVPLPAEAAALAAQRGYLPTRIPLLKRVGAVAPQEVCIADGSVRIDGVPSAAVLPADRLGRPLPSWQQCRRLRSGELFL
LSVINPASFDSRYFGPVSAATVIGVARPIWLESRP

Sequences:

>Translated_195_residues
MTAVSPADTAPRPRSRLHARIVLAGLSACGLAALAWASFVHPLPRLTYNPSDSVAVGWYRVDPLDHRASSPPRPLSVGSI
VLVPLPAEAAALAAQRGYLPTRIPLLKRVGAVAPQEVCIADGSVRIDGVPSAAVLPADRLGRPLPSWQQCRRLRSGELFL
LSVINPASFDSRYFGPVSAATVIGVARPIWLESRP
>Mature_194_residues
TAVSPADTAPRPRSRLHARIVLAGLSACGLAALAWASFVHPLPRLTYNPSDSVAVGWYRVDPLDHRASSPPRPLSVGSIV
LVPLPAEAAALAAQRGYLPTRIPLLKRVGAVAPQEVCIADGSVRIDGVPSAAVLPADRLGRPLPSWQQCRRLRSGELFLL
SVINPASFDSRYFGPVSAATVIGVARPIWLESRP

Specific function: Required for donor-specific phage sensitivity. May be involved in pilus assembly [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 20746; Mature: 20615

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVSPADTAPRPRSRLHARIVLAGLSACGLAALAWASFVHPLPRLTYNPSDSVAVGWYR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEE
VDPLDHRASSPPRPLSVGSIVLVPLPAEAAALAAQRGYLPTRIPLLKRVGAVAPQEVCIA
ECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEE
DGSVRIDGVPSAAVLPADRLGRPLPSWQQCRRLRSGELFLLSVINPASFDSRYFGPVSAA
CCCEEECCCCCCEECCHHHHCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHH
TVIGVARPIWLESRP
HHHHHCCCEEECCCC
>Mature Secondary Structure 
TAVSPADTAPRPRSRLHARIVLAGLSACGLAALAWASFVHPLPRLTYNPSDSVAVGWYR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEE
VDPLDHRASSPPRPLSVGSIVLVPLPAEAAALAAQRGYLPTRIPLLKRVGAVAPQEVCIA
ECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEE
DGSVRIDGVPSAAVLPADRLGRPLPSWQQCRRLRSGELFLLSVINPASFDSRYFGPVSAA
CCCEEECCCCCCEECCHHHHCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHH
TVIGVARPIWLESRP
HHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400217 [H]