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The map label for this gene is hoxZ [H]

Identifier: 94310239

GI number: 94310239

Start: 1410945

End: 1411676

Strand: Reverse

Name: hoxZ [H]

Synonym: Rmet_1295

Alternate gene names: 94310239

Gene position: 1411676-1410945 (Counterclockwise)

Preceding gene: 94310240

Following gene: 94310238

Centisome position: 35.94

GC content: 62.84

Gene sequence:

>732_bases
ATGTCCGCCACATCCCCTTCCGCACGCACCAGCGCCGCCGATCACGACGCGCTGGAATTGCAGCGAGGCCAGACCATCAA
GTCCGTCTACGTGTACGAAGTGCCGGTGCGCCTCTGGCACTGGATCAACGCGCTCGCCATCACGGTCCTGTGCATCACCG
GCTACTTCATCGGCGTGCCGCTGCCGACCATGCCGGGCGAAGCCAGCGCGAACTACCTCATGGGCTACATCCGTTTTGCG
CACTTCGCGGCGGGCTACATCATGGCCGTGGGCCTTCTGGGGCGGGCCTACTGGGCGCTGGTGGGCAACCACCACGCCAA
GGAGCTGTTCTGGGTGCCGGTGTTTCAAAAGGCCTACTGGGTCCAGGCCTTCAACATGCTGCGCTGGTACCTGTTCATGA
TTCCCAAGCCGAACCAGTACGTGGGCCACAACCCGCTGGCGCGCTTCGCCATGTTCTTCGTGTACCTGATGCTGTCGGTG
TTCATGGTCGTGACCGGCTTTGCGCTCTACAGCGAAGGCGCGCAGGCCGGCTCCTGGCAAGACCACCTGTTCGGCTGGGT
GATCCCGCTCATGGGCCAGAGCCAGGACGTGCACACCTGGCACCGCCTGGGCATGTGGGGCATCGTGGTGTTCGTGATGC
TGCACATCTACGCGGCGATCCGGGAAGACATCATGGGCCGCCAGAGCATCGTGAGCACGATGATTTCCGGTCACCGCACG
TTTAAAGAGTAA

Upstream 100 bases:

>100_bases
CTCAGCGGCCTGGGCGCCATGCTGAGCGCGGCGGGCCTTTACCTGTTCGGCCAGCTCGCCTGAACGCCCTGCACAACCGC
CATCGAAGGAGGTCATCGCC

Downstream 100 bases:

>100_bases
CTCCCCCCCGCGCCGCCTTCGGCGTCACCCCCCCCTCTGGGGGCGGTGCTGGAGGCCCGGCGAAGCCGGTTCCTCGGCAC
CTCTTGATCAAGGCATCTCT

Product: putative membrane-bound Ni/Fe-hydrogenase-linked b-type cytochrome HoxZ

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSATSPSARTSAADHDALELQRGQTIKSVYVYEVPVRLWHWINALAITVLCITGYFIGVPLPTMPGEASANYLMGYIRFA
HFAAGYIMAVGLLGRAYWALVGNHHAKELFWVPVFQKAYWVQAFNMLRWYLFMIPKPNQYVGHNPLARFAMFFVYLMLSV
FMVVTGFALYSEGAQAGSWQDHLFGWVIPLMGQSQDVHTWHRLGMWGIVVFVMLHIYAAIREDIMGRQSIVSTMISGHRT
FKE

Sequences:

>Translated_243_residues
MSATSPSARTSAADHDALELQRGQTIKSVYVYEVPVRLWHWINALAITVLCITGYFIGVPLPTMPGEASANYLMGYIRFA
HFAAGYIMAVGLLGRAYWALVGNHHAKELFWVPVFQKAYWVQAFNMLRWYLFMIPKPNQYVGHNPLARFAMFFVYLMLSV
FMVVTGFALYSEGAQAGSWQDHLFGWVIPLMGQSQDVHTWHRLGMWGIVVFVMLHIYAAIREDIMGRQSIVSTMISGHRT
FKE
>Mature_242_residues
SATSPSARTSAADHDALELQRGQTIKSVYVYEVPVRLWHWINALAITVLCITGYFIGVPLPTMPGEASANYLMGYIRFAH
FAAGYIMAVGLLGRAYWALVGNHHAKELFWVPVFQKAYWVQAFNMLRWYLFMIPKPNQYVGHNPLARFAMFFVYLMLSVF
MVVTGFALYSEGAQAGSWQDHLFGWVIPLMGQSQDVHTWHRLGMWGIVVFVMLHIYAAIREDIMGRQSIVSTMISGHRTF
KE

Specific function: Probable b-type cytochrome [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=226, Percent_Identity=49.1150442477876, Blast_Score=229, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 27692; Mature: 27561

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00882 NI_HGENASE_CYTB_1 ; PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure 
SATSPSARTSAADHDALELQRGQTIKSVYVYEVPVRLWHWINALAITVLCITGYFIGVP
CCCCCCCCCCCCCCHHHHHHCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
LPTMPGEASANYLMGYIRFAHFAAGYIMAVGLLGRAYWALVGNHHAKELFWVPVFQKAYW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEHHHHHHHHH
VQAFNMLRWYLFMIPKPNQYVGHNPLARFAMFFVYLMLSVFMVVTGFALYSEGAQAGSWQ
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
DHLFGWVIPLMGQSQDVHTWHRLGMWGIVVFVMLHIYAAIREDIMGRQSIVSTMISGHRT
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FKE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1383192; 12948488 [H]