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The map label for this gene is hypF1 [H]

Identifier: 94310228

GI number: 94310228

Start: 1403676

End: 1404815

Strand: Reverse

Name: hypF1 [H]

Synonym: Rmet_1284

Alternate gene names: 94310228

Gene position: 1404815-1403676 (Counterclockwise)

Preceding gene: 94310229

Following gene: 94310227

Centisome position: 35.76

GC content: 74.21

Gene sequence:

>1140_bases
ATGAGCGCAACCGTGCTCGCCGTCGGCGCCTGGCTGAAAAACGCGGCCTGCCTCGTGCTGGACGGCCGCGCGCACTGGTC
GCCGGTGCATGGCGACCTCAGCGACCCGGCGGCCTGCGACGCGCTGGAGCGCTCGGTGCAGGCGCTGGCGCGGCAGGCGG
AAGCCGCCGGTGCGCCGGTGCAGGCCATCGCACACGACCTGCACCCCGACTTCTTCAGCACCCAGCTGGCCATCGCCACC
GCCGATGCGCTGGGCGTGCCGGCCATCGGCGTGCAACACCACCACGCGCACCTCGCGGCGGTGATCGCCGAACACGCCAT
CGATGGTCCTGTGGTCGGGCTCGCGCTGGATGGTGTGGGCCTGGGCACGGACGGCACGCCCTGGGGCGGCGAACTGCTGT
GGCTGGAGGGTGCGCAGTGGCAGCGCCTGGGCCACCTGCAGCCGCTGGCCCTGCCTGGCGGCGACCGCGCGGCGCGCGAA
CCCTGGCGCATGGCCGCGAGCGCGCTGCACGCGCTGGACCGGGCAGACGAGATCGTGCCGCGCTTCGCACCGGTGGTGGG
CGAGGCCGTGGCGGCGGGCGTGCGCCAGATGCTGGACAAGCGCCTGAACTGCCCGCTGACCAGCAGCGCCGGCCGCTGGT
TCGACGCCGCGGCGGGCGCGCTGGGCCTGTGTCACCACCAGCAGGACGAAGCCCAGGCGGCCATCGCGCTGGAGCAGGCC
GCGACCCGCGCCATCTCGGCGCTGCCCGATCTGCCGCCGCTGGCCGGTGCGGTGCGCCACGACGACGGCCGCATCGACCT
GCGCGCCGTGCTGGCGCAACTGTTCGACGCCCCCGATGCCGACACCGGCGCCGCGGGCTTCCACCTGGCCTTGGCCGACG
CGCTGGCCGAGGCACTGATCACTGCCGCGCGCGGGCGCGGCGCCCGCACCGCCGCGCTGGGCGGTGGCTGCTTCTTCAAC
CGCATCCTGCGCGAGCGTACGGTGCAGCGTCTGCAGGCCGCCGGTCTGCAAGTGTTTCAGACCGGAGACAGGGGCTGCGG
CGACGCCGGGCTGGCCATCGGTCAGGCCTGGGTGGCGGCGCAGCAGCTCCAGACCCCAAGACAAGAACCCCACGTTGAGG
AGACCGTTCCATGTGCCTAG

Upstream 100 bases:

>100_bases
GAAGCAGCACTGCGTGAGCGCGTGAAGCAGCTCGAAGCCGAGCTGGCCCGCGCGAAAGCAGTCCTGTCCGCCAAGACCCC
GATCTGAGAGACACGACCCC

Downstream 100 bases:

>100_bases
CCATTCCCGCGCGCCTCGTCGAGAAGCGCGACCACGACCAGGCGGTGGTCGACCTCGGCGGCATCCGCAAGCCCGTGTCC
ATTGCCCTGGTGCCCGAGGC

Product: hydrogenase maturation protein HypF1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSATVLAVGAWLKNAACLVLDGRAHWSPVHGDLSDPAACDALERSVQALARQAEAAGAPVQAIAHDLHPDFFSTQLAIAT
ADALGVPAIGVQHHHAHLAAVIAEHAIDGPVVGLALDGVGLGTDGTPWGGELLWLEGAQWQRLGHLQPLALPGGDRAARE
PWRMAASALHALDRADEIVPRFAPVVGEAVAAGVRQMLDKRLNCPLTSSAGRWFDAAAGALGLCHHQQDEAQAAIALEQA
ATRAISALPDLPPLAGAVRHDDGRIDLRAVLAQLFDAPDADTGAAGFHLALADALAEALITAARGRGARTAALGGGCFFN
RILRERTVQRLQAAGLQVFQTGDRGCGDAGLAIGQAWVAAQQLQTPRQEPHVEETVPCA

Sequences:

>Translated_379_residues
MSATVLAVGAWLKNAACLVLDGRAHWSPVHGDLSDPAACDALERSVQALARQAEAAGAPVQAIAHDLHPDFFSTQLAIAT
ADALGVPAIGVQHHHAHLAAVIAEHAIDGPVVGLALDGVGLGTDGTPWGGELLWLEGAQWQRLGHLQPLALPGGDRAARE
PWRMAASALHALDRADEIVPRFAPVVGEAVAAGVRQMLDKRLNCPLTSSAGRWFDAAAGALGLCHHQQDEAQAAIALEQA
ATRAISALPDLPPLAGAVRHDDGRIDLRAVLAQLFDAPDADTGAAGFHLALADALAEALITAARGRGARTAALGGGCFFN
RILRERTVQRLQAAGLQVFQTGDRGCGDAGLAIGQAWVAAQQLQTPRQEPHVEETVPCA
>Mature_378_residues
SATVLAVGAWLKNAACLVLDGRAHWSPVHGDLSDPAACDALERSVQALARQAEAAGAPVQAIAHDLHPDFFSTQLAIATA
DALGVPAIGVQHHHAHLAAVIAEHAIDGPVVGLALDGVGLGTDGTPWGGELLWLEGAQWQRLGHLQPLALPGGDRAAREP
WRMAASALHALDRADEIVPRFAPVVGEAVAAGVRQMLDKRLNCPLTSSAGRWFDAAAGALGLCHHQQDEAQAAIALEQAA
TRAISALPDLPPLAGAVRHDDGRIDLRAVLAQLFDAPDADTGAAGFHLALADALAEALITAARGRGARTAALGGGCFFNR
ILRERTVQRLQAAGLQVFQTGDRGCGDAGLAIGQAWVAAQQLQTPRQEPHVEETVPCA

Specific function: Involved in the hydrogenase maturation process [H]

COG id: COG0068

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbamoyltransferase hypF family [H]

Homologues:

Organism=Escherichia coli, GI2367152, Length=373, Percent_Identity=34.3163538873995, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39347; Mature: 39216

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATVLAVGAWLKNAACLVLDGRAHWSPVHGDLSDPAACDALERSVQALARQAEAAGAPV
CCCCCEEHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
QAIAHDLHPDFFSTQLAIATADALGVPAIGVQHHHAHLAAVIAEHAIDGPVVGLALDGVG
HHHHHHHCCCHHHHHHHEEEHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
LGTDGTPWGGELLWLEGAQWQRLGHLQPLALPGGDRAAREPWRMAASALHALDRADEIVP
CCCCCCCCCCEEEEECCCHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFAPVVGEAVAAGVRQMLDKRLNCPLTSSAGRWFDAAAGALGLCHHQQDEAQAAIALEQA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ATRAISALPDLPPLAGAVRHDDGRIDLRAVLAQLFDAPDADTGAAGFHLALADALAEALI
HHHHHHHCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
TAARGRGARTAALGGGCFFNRILRERTVQRLQAAGLQVFQTGDRGCGDAGLAIGQAWVAA
HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH
QQLQTPRQEPHVEETVPCA
HHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SATVLAVGAWLKNAACLVLDGRAHWSPVHGDLSDPAACDALERSVQALARQAEAAGAPV
CCCCEEHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH
QAIAHDLHPDFFSTQLAIATADALGVPAIGVQHHHAHLAAVIAEHAIDGPVVGLALDGVG
HHHHHHHCCCHHHHHHHEEEHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC
LGTDGTPWGGELLWLEGAQWQRLGHLQPLALPGGDRAAREPWRMAASALHALDRADEIVP
CCCCCCCCCCEEEEECCCHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFAPVVGEAVAAGVRQMLDKRLNCPLTSSAGRWFDAAAGALGLCHHQQDEAQAAIALEQA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ATRAISALPDLPPLAGAVRHDDGRIDLRAVLAQLFDAPDADTGAAGFHLALADALAEALI
HHHHHHHCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
TAARGRGARTAALGGGCFFNRILRERTVQRLQAAGLQVFQTGDRGCGDAGLAIGQAWVAA
HHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH
QQLQTPRQEPHVEETVPCA
HHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]