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The map label for this gene is hypC1 [H]

Identifier: 94310227

GI number: 94310227

Start: 1403458

End: 1403685

Strand: Reverse

Name: hypC1 [H]

Synonym: Rmet_1283

Alternate gene names: 94310227

Gene position: 1403685-1403458 (Counterclockwise)

Preceding gene: 94310228

Following gene: 94310226

Centisome position: 35.73

GC content: 67.54

Gene sequence:

>228_bases
ATGTGCCTAGCCATTCCCGCGCGCCTCGTCGAGAAGCGCGACCACGACCAGGCGGTGGTCGACCTCGGCGGCATCCGCAA
GCCCGTGTCCATTGCCCTGGTGCCCGAGGCCGAAGTCGGCGATTACGTCATCGTGCACGTGGGCCACGCCATCGGCATGA
TCGACCCCGAGGAGGCCGAGAAGACCCTCGCGCTGTTTGCCGAGATGCAGGCCATGACCGGCGCGTAG

Upstream 100 bases:

>100_bases
GGGGCTGCGGCGACGCCGGGCTGGCCATCGGTCAGGCCTGGGTGGCGGCGCAGCAGCTCCAGACCCCAAGACAAGAACCC
CACGTTGAGGAGACCGTTCC

Downstream 100 bases:

>100_bases
GTGCAGCCATGAAATTCATCGACGAGTTCCGCGATGGCGAACTGGCCAAACAGATCGGCGAACGCATCCATGCCGAGGCA
CGCAGCGACCGCGCCTACAG

Product: hydrogenase 2 accessory protein HypC1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 75; Mature: 75

Protein sequence:

>75_residues
MCLAIPARLVEKRDHDQAVVDLGGIRKPVSIALVPEAEVGDYVIVHVGHAIGMIDPEEAEKTLALFAEMQAMTGA

Sequences:

>Translated_75_residues
MCLAIPARLVEKRDHDQAVVDLGGIRKPVSIALVPEAEVGDYVIVHVGHAIGMIDPEEAEKTLALFAEMQAMTGA
>Mature_75_residues
MCLAIPARLVEKRDHDQAVVDLGGIRKPVSIALVPEAEVGDYVIVHVGHAIGMIDPEEAEKTLALFAEMQAMTGA

Specific function: May Have A Specific Role In The Maturation Of The Large Subunits Of Hyd1 And Hyd2. [C]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 8008; Mature: 8008

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLAIPARLVEKRDHDQAVVDLGGIRKPVSIALVPEAEVGDYVIVHVGHAIGMIDPEEAE
CCEECCHHHHCCCCCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHH
KTLALFAEMQAMTGA
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MCLAIPARLVEKRDHDQAVVDLGGIRKPVSIALVPEAEVGDYVIVHVGHAIGMIDPEEAE
CCEECCHHHHCCCCCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHH
KTLALFAEMQAMTGA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]