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The map label for this gene is ritA1 [C]

Identifier: 94310215

GI number: 94310215

Start: 1393469

End: 1394701

Strand: Direct

Name: ritA1 [C]

Synonym: Rmet_1271

Alternate gene names: 94310215

Gene position: 1393469-1394701 (Clockwise)

Preceding gene: 94310203

Following gene: 94310216

Centisome position: 35.47

GC content: 59.37

Gene sequence:

>1233_bases
ATGAATGCGACACGCACAGTCAGCGAATCCGGCGGGCTACCGGCCCATCACATCGATGCATTTCTTGATCGTCTACGGAC
GGCTCACTACTCCGAGGTATCGCTTCGCAAGAAACGAAGAGTCCTGTGTGCGTTCTCTGGGTGGATGAAGCACAGGAACA
TCGACCTGATTGACCTCGATGAGTCTGTCACGGCTCGTTTTATGAAGCGCATGATCGACGCATCACGAGACCGCGTCCAG
CGTGCTCGTCCCACATTGCGGCAGTTTCTCGCCTATCTGCGCGCGGAAGCCATTGTGTGTTCGCCGACATTAGGCAGCCA
GTCCGCGATCGCGCACACTTATCGCCGATACTTGGACTATCTGAGGCAGGATCGTGGACTCGCGAAGAACTCTCTGCTCG
TCTACGGCCCGTTCATTCGCGACTTTCTCGACAGTCACTCGGCCGGCGACGGAAGTTTATTGCCAGATGCATTTGACGCG
GTAACGATCCGGAATCATCTTCTTGCCCGCAGCAAAGGCCGATCGGCGGAATACACGCGGCTGATGGCAGTTGCGCTTCG
CTCGTTCTGCCATTTCCTCTTTCTGCGTGGCGATACGGCCCGAGACCTGGCTGGGTCAGTGCCCTCGGTTCGTAAGTGGC
GACAGTCGACTGTGCCGACGTTCCTCACGCCTGAGCAGCAAGAAGCTCTCATTGCATCTGCAGACCGGTCGACTCCGACT
GGGCTCCGTGACTATGCAATCCTGCTGTTGTTGGCGAGGCTCGGCTTACGTGCCGGAGAAATCATCGAGATCGAGCTCGA
CGACATTCACTGGCGTTCGGGGGAACTCGTCGTTCATGGCAAGGGGCAAATGGTCGAGCACGTGCCGCTCTCATCGGAGG
TTGGAGCAGCAATCGCAACATATCTCCGCGATGGTCGCGGAGCGAGTGCATCGCGTCGCGTCTTCCTTCGCAGATTGGCG
CCTCGAGTTGGTTTGGCGGGCCCGGCGGCGATTGGCAAGATTGTTTGTCAGGCCTTCGCACGTGTTGGTTTCCGCCCCGC
GTGCAGGGGCGCTGCACATCTGTTCCGTCACGGTCTGGCGACGACGATGATTCGCCACGGGGCCTCGATGGCAGAAATCG
CCGAGGTCTTGCGGCACCGCTCACCCGACAGTACCGCGATCTACGCAAAGGTCGCGTTTGAGGACCTGCGCGGTGTCGCG
CGTTCGTGGCCCACGGCAGGAGGTGCAATATGA

Upstream 100 bases:

>100_bases
ATGCATGCACGTGGCGGTGGGTCTGTCCTTTCATGATCGCTGTGTCGGCATAAATCTATGATTTCTCAGGCTGGCTATCG
CGCTGGCCAGGAGAGATCAG

Downstream 100 bases:

>100_bases
CTGCGATCCACGAGTCTCTCGCCCAGTACGTGGCAGTCCGCCGTGCTCTCGGGGCGTCATTCTATGAGCCTGCGTTGGCA
CTCGGTCATTTCGTTGATCT

Product: tyrosine-based site-specific recombinase (recombinase triad in CMGI-2)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCAFSGWMKHRNIDLIDLDESVTARFMKRMIDASRDRVQ
RARPTLRQFLAYLRAEAIVCSPTLGSQSAIAHTYRRYLDYLRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLLPDAFDA
VTIRNHLLARSKGRSAEYTRLMAVALRSFCHFLFLRGDTARDLAGSVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
GLRDYAILLLLARLGLRAGEIIEIELDDIHWRSGELVVHGKGQMVEHVPLSSEVGAAIATYLRDGRGASASRRVFLRRLA
PRVGLAGPAAIGKIVCQAFARVGFRPACRGAAHLFRHGLATTMIRHGASMAEIAEVLRHRSPDSTAIYAKVAFEDLRGVA
RSWPTAGGAI

Sequences:

>Translated_410_residues
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCAFSGWMKHRNIDLIDLDESVTARFMKRMIDASRDRVQ
RARPTLRQFLAYLRAEAIVCSPTLGSQSAIAHTYRRYLDYLRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLLPDAFDA
VTIRNHLLARSKGRSAEYTRLMAVALRSFCHFLFLRGDTARDLAGSVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
GLRDYAILLLLARLGLRAGEIIEIELDDIHWRSGELVVHGKGQMVEHVPLSSEVGAAIATYLRDGRGASASRRVFLRRLA
PRVGLAGPAAIGKIVCQAFARVGFRPACRGAAHLFRHGLATTMIRHGASMAEIAEVLRHRSPDSTAIYAKVAFEDLRGVA
RSWPTAGGAI
>Mature_410_residues
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCAFSGWMKHRNIDLIDLDESVTARFMKRMIDASRDRVQ
RARPTLRQFLAYLRAEAIVCSPTLGSQSAIAHTYRRYLDYLRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLLPDAFDA
VTIRNHLLARSKGRSAEYTRLMAVALRSFCHFLFLRGDTARDLAGSVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
GLRDYAILLLLARLGLRAGEIIEIELDDIHWRSGELVVHGKGQMVEHVPLSSEVGAAIATYLRDGRGASASRRVFLRRLA
PRVGLAGPAAIGKIVCQAFARVGFRPACRGAAHLFRHGLATTMIRHGASMAEIAEVLRHRSPDSTAIYAKVAFEDLRGVA
RSWPTAGGAI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=289, Percent_Identity=26.9896193771626, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789261, Length=309, Percent_Identity=25.8899676375405, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45404; Mature: 45404

Theoretical pI: Translated: 10.86; Mature: 10.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCAFSGWMKHRNIDLIDLD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
ESVTARFMKRMIDASRDRVQRARPTLRQFLAYLRAEAIVCSPTLGSQSAIAHTYRRYLDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
LRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLLPDAFDAVTIRNHLLARSKGRSAEYTR
HHHHCCCCCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
LMAVALRSFCHFLFLRGDTARDLAGSVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
GLRDYAILLLLARLGLRAGEIIEIELDDIHWRSGELVVHGKGQMVEHVPLSSEVGAAIAT
CHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCEEEECCCCEEECCCCCHHHHHHHHH
YLRDGRGASASRRVFLRRLAPRVGLAGPAAIGKIVCQAFARVGFRPACRGAAHLFRHGLA
HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TTMIRHGASMAEIAEVLRHRSPDSTAIYAKVAFEDLRGVARSWPTAGGAI
HHHHHCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCAFSGWMKHRNIDLIDLD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
ESVTARFMKRMIDASRDRVQRARPTLRQFLAYLRAEAIVCSPTLGSQSAIAHTYRRYLDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
LRQDRGLAKNSLLVYGPFIRDFLDSHSAGDGSLLPDAFDAVTIRNHLLARSKGRSAEYTR
HHHHCCCCCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH
LMAVALRSFCHFLFLRGDTARDLAGSVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
HHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
GLRDYAILLLLARLGLRAGEIIEIELDDIHWRSGELVVHGKGQMVEHVPLSSEVGAAIAT
CHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCEEEECCCCEEECCCCCHHHHHHHHH
YLRDGRGASASRRVFLRRLAPRVGLAGPAAIGKIVCQAFARVGFRPACRGAAHLFRHGLA
HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TTMIRHGASMAEIAEVLRHRSPDSTAIYAKVAFEDLRGVARSWPTAGGAI
HHHHHCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]