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The map label for this gene is ritB1 [C]

Identifier: 94310216

GI number: 94310216

Start: 1394698

End: 1395645

Strand: Direct

Name: ritB1 [C]

Synonym: Rmet_1272

Alternate gene names: 94310216

Gene position: 1394698-1395645 (Clockwise)

Preceding gene: 94310215

Following gene: 94310217

Centisome position: 35.51

GC content: 59.49

Gene sequence:

>948_bases
ATGACTGCGATCCACGAGTCTCTCGCCCAGTACGTGGCAGTCCGCCGTGCTCTCGGGGCGTCATTCTATGAGCCTGCGTT
GGCACTCGGTCATTTCGTTGATCTGCTGGAACGCGAAGGCGCCGAGTTCATTACAACCGATCTGGCTCTGCGCTGGGCGA
CGACGCCCGAACTCGTCGAACGCGCTACGTGGGGGCGGCGCCTCTCTCAAGTGAGAGGATTTGCCAGATGGATGAACGTG
ATTGACAGTCGAAACCAGATTCCTCCAGCAGGACTCCTGAGTGCCCGCAGACGGCGCAACGCCCCGCATATTTACACTGA
GCAGGAAATTGATCGGCTTATGACCCGCGCCTCTCAACTGCGATCCCGAACTGGCATCCGAGCACTGACCTATTCGACGC
TCATAGGGCTTCTTGTAGCGACGGGCCTCAGGCCAGGCGAGGCGCTCCGGCTCGACCGGTCCGACGTTGACCTCGTCAGC
GGGATACTCTCCATTCGGGAATCGAAGTTCGGCAAATCCCGCTTTGTTCCAGTAGCAGAGTCTTCCCGGGTGGCGCTCGA
ACACTATGCCCGGAAACGCGATCAACTCTGTCCTGTACGATTGAGCGAAGCGTTCCTGGTTAGTGAGCACGGCAAGCGAC
TGAAGGCAGGCACTGCACGAAGCATGTTCGTCAGAATGTCGCGCGCTGTTGGTCTGCGATCGGCGACAGAGGGCGGGCGC
GATGGTTACGGCCCGCGCCTGCAGGACTTCCGGCATAGCTTCGCGACTGGAAGACTGGTCGAATGGTATCGCGCCGGTCT
GGACGTAAGTCGGGAATTGCCGAAACTTGCCGCCTACCTCGGGCATGTCAACATCGGCCTTACGTACTGGTATATCGAAT
CGGTTCCTGAGTTGCTGGAACTCGCGGCAGCCTATCTCGACAAGGACTGTCCGGGAGAACGGACGTGA

Upstream 100 bases:

>100_bases
TGCGGCACCGCTCACCCGACAGTACCGCGATCTACGCAAAGGTCGCGTTTGAGGACCTGCGCGGTGTCGCGCGTTCGTGG
CCCACGGCAGGAGGTGCAAT

Downstream 100 bases:

>100_bases
GCGCCGCCAGTCTCCCAGCCCTCGTTCAGCGCTTCTTCACCCAGCGCCTGCTCGAGCAGCAAGGTCTGAGTTCGCATACG
GTGGCAAGTTACCGTGACAC

Product: tyrosine based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTAIHESLAQYVAVRRALGASFYEPALALGHFVDLLEREGAEFITTDLALRWATTPELVERATWGRRLSQVRGFARWMNV
IDSRNQIPPAGLLSARRRRNAPHIYTEQEIDRLMTRASQLRSRTGIRALTYSTLIGLLVATGLRPGEALRLDRSDVDLVS
GILSIRESKFGKSRFVPVAESSRVALEHYARKRDQLCPVRLSEAFLVSEHGKRLKAGTARSMFVRMSRAVGLRSATEGGR
DGYGPRLQDFRHSFATGRLVEWYRAGLDVSRELPKLAAYLGHVNIGLTYWYIESVPELLELAAAYLDKDCPGERT

Sequences:

>Translated_315_residues
MTAIHESLAQYVAVRRALGASFYEPALALGHFVDLLEREGAEFITTDLALRWATTPELVERATWGRRLSQVRGFARWMNV
IDSRNQIPPAGLLSARRRRNAPHIYTEQEIDRLMTRASQLRSRTGIRALTYSTLIGLLVATGLRPGEALRLDRSDVDLVS
GILSIRESKFGKSRFVPVAESSRVALEHYARKRDQLCPVRLSEAFLVSEHGKRLKAGTARSMFVRMSRAVGLRSATEGGR
DGYGPRLQDFRHSFATGRLVEWYRAGLDVSRELPKLAAYLGHVNIGLTYWYIESVPELLELAAAYLDKDCPGERT
>Mature_314_residues
TAIHESLAQYVAVRRALGASFYEPALALGHFVDLLEREGAEFITTDLALRWATTPELVERATWGRRLSQVRGFARWMNVI
DSRNQIPPAGLLSARRRRNAPHIYTEQEIDRLMTRASQLRSRTGIRALTYSTLIGLLVATGLRPGEALRLDRSDVDLVSG
ILSIRESKFGKSRFVPVAESSRVALEHYARKRDQLCPVRLSEAFLVSEHGKRLKAGTARSMFVRMSRAVGLRSATEGGRD
GYGPRLQDFRHSFATGRLVEWYRAGLDVSRELPKLAAYLGHVNIGLTYWYIESVPELLELAAAYLDKDCPGERT

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35413; Mature: 35282

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIHESLAQYVAVRRALGASFYEPALALGHFVDLLEREGAEFITTDLALRWATTPELVE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCHHHHH
RATWGRRLSQVRGFARWMNVIDSRNQIPPAGLLSARRRRNAPHIYTEQEIDRLMTRASQL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
RSRTGIRALTYSTLIGLLVATGLRPGEALRLDRSDVDLVSGILSIRESKFGKSRFVPVAE
HHHCCHHHHHHHHHHHHHHHHCCCCCHHEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
SSRVALEHYARKRDQLCPVRLSEAFLVSEHGKRLKAGTARSMFVRMSRAVGLRSATEGGR
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHCCCCCC
DGYGPRLQDFRHSFATGRLVEWYRAGLDVSRELPKLAAYLGHVNIGLTYWYIESVPELLE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAAYLDKDCPGERT
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
TAIHESLAQYVAVRRALGASFYEPALALGHFVDLLEREGAEFITTDLALRWATTPELVE
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCHHHHH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HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]