Click here to switch to the map view.

The map label for this gene is ritB2 [C]

Identifier: 94310185

GI number: 94310185

Start: 1363839

End: 1364831

Strand: Direct

Name: ritB2 [C]

Synonym: Rmet_1240

Alternate gene names: 94310185

Gene position: 1363839-1364831 (Clockwise)

Preceding gene: 94310184

Following gene: 94310186

Centisome position: 34.72

GC content: 59.32

Gene sequence:

>993_bases
ATGACTGCCCACTGGAATGGTTATCACAGCGCGCTGGCCACACATATCGAACAATACCTTCGGGCCAAGCGCGCCATGGG
TTGCAAGTTCGCATGCGAAGGCCGCCAACTGAGACTCCTTGATCGGTTCCTCGCTGAGCGCGGCATTGACAAGATAGACG
TCATCGACGGCGCATGCTTGCAGGCGTTTCTGGACTCGCGTCACCGAACCAATCCTCGTAGTTATAACAATCTGCTCGGA
GATGTCCGGAGATTGTTTGACTGGATCGTCGGTCAGCAGATGCTGCCCGCATCGCCATTGGTTGCAAAGGCCAAGCCGCA
GAGAGCCCGGCGGATTCCCTTCCTGTTCTCACCCGAAGTGATCAGGCGACTGCTGGCCCTGGCCAGGGCTTTGCCGGATA
ACTCCCGTGCACCACAGCGCGGCATCACCTACGAGATGATTTTTGCACTGCTCGCCAGCCTTGGGCTACGAGTGGGCGAG
GTGGCCGGTTTGCAGTGGGGCGACGTGGACCTGGAGCGCGAGGTCCTGGAGATATCCAACACCAAGTTCGGCAAGGACCG
GCTGGTGCCCTTTGGCCCCAAGCTAGCAGCCAGGCTACGCGAGTATCGGCTTGAACGCGAGCGGCAGGGCCGTATCTGCA
CAGGCGCCCACCATCTGTTTTCATGGAACGGCCGCACACCGATCAGCACCAATAGCATCCGCAACACCTTCAGGGACGAT
CTGCTGCCACAGCTACACCTCACGGTGCCGCCTGGCTGCTTTGGCCCGCACGTCCATGGTTTGCGGCATTCTTTCGCGGT
GCGAACGTTGCTGGGCTGGTACCGCCAAGGAATCATTCCCAGTGACCGCTTGCATCACCTGTCCACGTTCCTGGGACACG
TCAATCCCAAGAGCACGGCGGTGTATCTGACGATCACCAACGAGCTGCTCGATGCCGCCAATGAGCGTTTCGAGTCATTT
GCACCATTGTTGGCTGCGGGAGGTTCATCATGA

Upstream 100 bases:

>100_bases
ACTACGTAGGCCATAGCCATCCGTCTTCCACGCTTGTCTATGGCAAGGTGGCGGTACACAAGCTGCGTCAGATCGTCCTC
TTCCAAGGGGAGGACGTGCT

Downstream 100 bases:

>100_bases
AGGACTTCAACCTTCCGTCGATCATTCACCGCTACTTTCTGGAGTATTTGCCTCGGCACAAGGGGCTGCAATCGAGCTCA
ATCCGCAGCTATCGGGATAG

Product: tyrosine-based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTAHWNGYHSALATHIEQYLRAKRAMGCKFACEGRQLRLLDRFLAERGIDKIDVIDGACLQAFLDSRHRTNPRSYNNLLG
DVRRLFDWIVGQQMLPASPLVAKAKPQRARRIPFLFSPEVIRRLLALARALPDNSRAPQRGITYEMIFALLASLGLRVGE
VAGLQWGDVDLEREVLEISNTKFGKDRLVPFGPKLAARLREYRLERERQGRICTGAHHLFSWNGRTPISTNSIRNTFRDD
LLPQLHLTVPPGCFGPHVHGLRHSFAVRTLLGWYRQGIIPSDRLHHLSTFLGHVNPKSTAVYLTITNELLDAANERFESF
APLLAAGGSS

Sequences:

>Translated_330_residues
MTAHWNGYHSALATHIEQYLRAKRAMGCKFACEGRQLRLLDRFLAERGIDKIDVIDGACLQAFLDSRHRTNPRSYNNLLG
DVRRLFDWIVGQQMLPASPLVAKAKPQRARRIPFLFSPEVIRRLLALARALPDNSRAPQRGITYEMIFALLASLGLRVGE
VAGLQWGDVDLEREVLEISNTKFGKDRLVPFGPKLAARLREYRLERERQGRICTGAHHLFSWNGRTPISTNSIRNTFRDD
LLPQLHLTVPPGCFGPHVHGLRHSFAVRTLLGWYRQGIIPSDRLHHLSTFLGHVNPKSTAVYLTITNELLDAANERFESF
APLLAAGGSS
>Mature_329_residues
TAHWNGYHSALATHIEQYLRAKRAMGCKFACEGRQLRLLDRFLAERGIDKIDVIDGACLQAFLDSRHRTNPRSYNNLLGD
VRRLFDWIVGQQMLPASPLVAKAKPQRARRIPFLFSPEVIRRLLALARALPDNSRAPQRGITYEMIFALLASLGLRVGEV
AGLQWGDVDLEREVLEISNTKFGKDRLVPFGPKLAARLREYRLERERQGRICTGAHHLFSWNGRTPISTNSIRNTFRDDL
LPQLHLTVPPGCFGPHVHGLRHSFAVRTLLGWYRQGIIPSDRLHHLSTFLGHVNPKSTAVYLTITNELLDAANERFESFA
PLLAAGGSS

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37268; Mature: 37137

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAHWNGYHSALATHIEQYLRAKRAMGCKFACEGRQLRLLDRFLAERGIDKIDVIDGACL
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHH
QAFLDSRHRTNPRSYNNLLGDVRRLFDWIVGQQMLPASPLVAKAKPQRARRIPFLFSPEV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHCCCCEECHHH
IRRLLALARALPDNSRAPQRGITYEMIFALLASLGLRVGEVAGLQWGDVDLEREVLEISN
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCC
TKFGKDRLVPFGPKLAARLREYRLERERQGRICTGAHHLFSWNGRTPISTNSIRNTFRDD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECHHHHEECCCCCCCCHHHHHHHHHHH
LLPQLHLTVPPGCFGPHVHGLRHSFAVRTLLGWYRQGIIPSDRLHHLSTFLGHVNPKSTA
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
VYLTITNELLDAANERFESFAPLLAAGGSS
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAHWNGYHSALATHIEQYLRAKRAMGCKFACEGRQLRLLDRFLAERGIDKIDVIDGACL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHH
QAFLDSRHRTNPRSYNNLLGDVRRLFDWIVGQQMLPASPLVAKAKPQRARRIPFLFSPEV
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHCCCCEECHHH
IRRLLALARALPDNSRAPQRGITYEMIFALLASLGLRVGEVAGLQWGDVDLEREVLEISN
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCC
TKFGKDRLVPFGPKLAARLREYRLERERQGRICTGAHHLFSWNGRTPISTNSIRNTFRDD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECHHHHEECCCCCCCCHHHHHHHHHHH
LLPQLHLTVPPGCFGPHVHGLRHSFAVRTLLGWYRQGIIPSDRLHHLSTFLGHVNPKSTA
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
VYLTITNELLDAANERFESFAPLLAAGGSS
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]