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The map label for this gene is ritC2 [C]

Identifier: 94310186

GI number: 94310186

Start: 1364828

End: 1365838

Strand: Direct

Name: ritC2 [C]

Synonym: Rmet_1241

Alternate gene names: 94310186

Gene position: 1364828-1365838 (Clockwise)

Preceding gene: 94310185

Following gene: 94310188

Centisome position: 34.75

GC content: 59.25

Gene sequence:

>1011_bases
ATGAAGGACTTCAACCTTCCGTCGATCATTCACCGCTACTTTCTGGAGTATTTGCCTCGGCACAAGGGGCTGCAATCGAG
CTCAATCCGCAGCTATCGGGATAGCCTGCGCCTGTTCCTGATCTTTGTGGCGGGCACACACCGGCTCGGCGTCAGCGAAC
TGGTATTGGAGCACCTTGATTATCCCGCCGTGCAGGCGTTTCTGCACAGCATGGAGGCCGATCGAGGCAACGCCATCAGT
ACCCGCAACCAGCGCTTGGCGGCACTTCATGTGTTCTACGAATACGTGGGCCGGACCGTTCCAGAGATGTTGCCTACCAG
TGCCAAGGTCGCTGCCATCCCGATGAAGCGTTGCCCACGGCCGGAGATGACGTTCCTTGGACGTGACGAGGTTCAAGCCA
TGTTCGCCTGCATTCCTGCTCAGCATCGCCTCTCATCACGGGATCGGGCGCTGCTTATGCTGCTCTACAACACCGGCGCG
CGTGTTTCAGAGGTCGCGCATCTGAAGGTCGAACAACTCGACCTGCGCTCACCTGCGCGCGTCAGGCTATTGGGCAAGGG
GTCGAAGTGGCGCACGTGCCCACTCTGGAACCAGACGGCCAAGGCGCTGCAGGCGATGCTGGATGAGCGCGGAACGAACT
TGCCTCCCGAATCGCCGGTATTCGTTGGAGCTTCGCAGGCGCCGATGACCCGGTTCGGTATTTACAAGCGCATCCGCCAC
TATGCCACGCTCTGGGAAGCATCGGGGCACACAGCTTCCGCAGCCAAGGTAACGCCTCACGTATTTCGACACACCACAGC
GGTTCATCTACTTGAGTCGGGCGTGGAGGTCAATGTCATCCGAGGCTGGCTGGGACATGTCAATCTGGAGACGACCAATC
GCTATGCGGAAATCACCATTCGCATGAAGGCCGAAGCCCTGAAGTTGTGCGATCCGATCGTCGCAGGTGTTCCACGCAAA
CCCGCCTGGAAAGACGATGCTGCGATGATGGCCTGGCTGTCGTCCCTCTGA

Upstream 100 bases:

>100_bases
AGAGCACGGCGGTGTATCTGACGATCACCAACGAGCTGCTCGATGCCGCCAATGAGCGTTTCGAGTCATTTGCACCATTG
TTGGCTGCGGGAGGTTCATC

Downstream 100 bases:

>100_bases
CGCGACCACGATGCTGGGCGGCCAAGGCACGCTGCCCAGTGTCCAAAAACAATCATCTCTCTATCGAACGGGCGAGAATA
TGCGTACCCAGTCGGGCTTC

Product: tyrosine-based site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKDFNLPSIIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLDYPAVQAFLHSMEADRGNAIS
TRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPRPEMTFLGRDEVQAMFACIPAQHRLSSRDRALLMLLYNTGA
RVSEVAHLKVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRH
YATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVAGVPRK
PAWKDDAAMMAWLSSL

Sequences:

>Translated_336_residues
MKDFNLPSIIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLDYPAVQAFLHSMEADRGNAIS
TRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPRPEMTFLGRDEVQAMFACIPAQHRLSSRDRALLMLLYNTGA
RVSEVAHLKVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRH
YATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVAGVPRK
PAWKDDAAMMAWLSSL
>Mature_336_residues
MKDFNLPSIIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLDYPAVQAFLHSMEADRGNAIS
TRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPRPEMTFLGRDEVQAMFACIPAQHRLSSRDRALLMLLYNTGA
RVSEVAHLKVEQLDLRSPARVRLLGKGSKWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRH
YATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITIRMKAEALKLCDPIVAGVPRK
PAWKDDAAMMAWLSSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=30.5841924398625, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790244, Length=228, Percent_Identity=28.0701754385965, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790768, Length=176, Percent_Identity=27.8409090909091, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37917; Mature: 37917

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFNLPSIIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLD
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCC
YPAVQAFLHSMEADRGNAISTRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPR
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHCCC
PEMTFLGRDEVQAMFACIPAQHRLSSRDRALLMLLYNTGARVSEVAHLKVEQLDLRSPAR
CCCEECCHHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCE
VRLLGKGSKWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRH
EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
YATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITI
HHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCEEEEECCCEEEEEE
RMKAEALKLCDPIVAGVPRKPAWKDDAAMMAWLSSL
EEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKDFNLPSIIHRYFLEYLPRHKGLQSSSIRSYRDSLRLFLIFVAGTHRLGVSELVLEHLD
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCC
YPAVQAFLHSMEADRGNAISTRNQRLAALHVFYEYVGRTVPEMLPTSAKVAAIPMKRCPR
CHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHCCC
PEMTFLGRDEVQAMFACIPAQHRLSSRDRALLMLLYNTGARVSEVAHLKVEQLDLRSPAR
CCCEECCHHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCE
VRLLGKGSKWRTCPLWNQTAKALQAMLDERGTNLPPESPVFVGASQAPMTRFGIYKRIRH
EEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
YATLWEASGHTASAAKVTPHVFRHTTAVHLLESGVEVNVIRGWLGHVNLETTNRYAEITI
HHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCEEEEECCCEEEEEE
RMKAEALKLCDPIVAGVPRKPAWKDDAAMMAWLSSL
EEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]