Click here to switch to the map view.

The map label for this gene is yiaM [C]

Identifier: 94310093

GI number: 94310093

Start: 1258972

End: 1259562

Strand: Direct

Name: yiaM [C]

Synonym: Rmet_1148

Alternate gene names: 94310093

Gene position: 1258972-1259562 (Clockwise)

Preceding gene: 94310092

Following gene: 94310094

Centisome position: 32.05

GC content: 63.79

Gene sequence:

>591_bases
ATGGAGCAAGACAATCAGGCACGGCGCGACGCCGTGCCGCAGCATGTCGTCGATTCGGTGATCATCCCCGAAGCCGCCGA
CGAAGCGCGGGACAGCGAATTCCGGGTTTCACCGCGTATCGAGGACTGGATCGGCGTGATCGTGATGGGGTTGCTGGTAA
TCATCACGTTCGCCAACGTGGTGGTCCGCTACTTCACCGACGAATCGTTTGCCTGGACCGAGGAGTTCTCGGTCTTCCTG
ATGATCGTGCTGGCGCTGGTGGCTGGCAGCGCCGCCGTGGCGCGCGATCGCAATATCCGCATCGAATTTTTCTTCGAGCG
TGGCAGTGCCGCGCGGCAGAAGCGGCTGGCCATCGTTTCGGCACTGGCCGTCGCGGTCATGTTCCTGGCCCTCGCCGTGC
TGGGTGTGCGGATCACGTGGGACGAGTACACGTTCGGTGAGACATCACCGGGCATCGGCGTGCCGAGCTGGTGGTACTCG
GTCTGGCTGCCCGTGCTGTCGATCTCAATAACGCTGCGGGCGCTGGCTCTGGCCCTGCGCAATGTCCGGGCGCTGCGTGC
CCTGAAGAACGATGGGGAGCGCGCGCAATGA

Upstream 100 bases:

>100_bases
TTCTGGGCAGGGAAGGTGGCGCGGCGAGACCATGGCGCCCGTACCACGGTGCCAGAATCGTTTTGTTAGCGCCTCGGGAC
CGGACCGGAGGCCGGGGAGG

Downstream 100 bases:

>100_bases
CGCTGATCGCCATCATTCTGTTCGTGGTTTTCATTGGCCTGATGCTGCTGGGCGCGCCAATTGGCGTGTCGCTGGGGCTG
GGCGGTCTGGTCGCCATCGG

Product: Tripartite ATP-independent C4-dicarboxylate transport system, DctQ subunit

Products: NA

Alternate protein names: TRAP Transporter Subunit DctQ; TRAP Transporter Small Transmembrane Protein; Integral Membrane Protein; Tripartite ATP-Independent Periplasmic; DctQ1 Protein; Tripartite ATP-Independent Periplasmic Transporter

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MEQDNQARRDAVPQHVVDSVIIPEAADEARDSEFRVSPRIEDWIGVIVMGLLVIITFANVVVRYFTDESFAWTEEFSVFL
MIVLALVAGSAAVARDRNIRIEFFFERGSAARQKRLAIVSALAVAVMFLALAVLGVRITWDEYTFGETSPGIGVPSWWYS
VWLPVLSISITLRALALALRNVRALRALKNDGERAQ

Sequences:

>Translated_196_residues
MEQDNQARRDAVPQHVVDSVIIPEAADEARDSEFRVSPRIEDWIGVIVMGLLVIITFANVVVRYFTDESFAWTEEFSVFL
MIVLALVAGSAAVARDRNIRIEFFFERGSAARQKRLAIVSALAVAVMFLALAVLGVRITWDEYTFGETSPGIGVPSWWYS
VWLPVLSISITLRALALALRNVRALRALKNDGERAQ
>Mature_196_residues
MEQDNQARRDAVPQHVVDSVIIPEAADEARDSEFRVSPRIEDWIGVIVMGLLVIITFANVVVRYFTDESFAWTEEFSVFL
MIVLALVAGSAAVARDRNIRIEFFFERGSAARQKRLAIVSALAVAVMFLALAVLGVRITWDEYTFGETSPGIGVPSWWYS
VWLPVLSISITLRALALALRNVRALRALKNDGERAQ

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21912; Mature: 21912

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQDNQARRDAVPQHVVDSVIIPEAADEARDSEFRVSPRIEDWIGVIVMGLLVIITFANV
CCCCCHHHHHCCHHHHHHHHHCCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
VVRYFTDESFAWTEEFSVFLMIVLALVAGSAAVARDRNIRIEFFFERGSAARQKRLAIVS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHH
ALAVAVMFLALAVLGVRITWDEYTFGETSPGIGVPSWWYSVWLPVLSISITLRALALALR
HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NVRALRALKNDGERAQ
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEQDNQARRDAVPQHVVDSVIIPEAADEARDSEFRVSPRIEDWIGVIVMGLLVIITFANV
CCCCCHHHHHCCHHHHHHHHHCCCCHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHH
VVRYFTDESFAWTEEFSVFLMIVLALVAGSAAVARDRNIRIEFFFERGSAARQKRLAIVS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHH
ALAVAVMFLALAVLGVRITWDEYTFGETSPGIGVPSWWYSVWLPVLSISITLRALALALR
HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NVRALRALKNDGERAQ
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA