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The map label for this gene is rnfB [H]

Identifier: 94309960

GI number: 94309960

Start: 1104628

End: 1105467

Strand: Reverse

Name: rnfB [H]

Synonym: Rmet_1015

Alternate gene names: 94309960

Gene position: 1105467-1104628 (Counterclockwise)

Preceding gene: 94309962

Following gene: 94309959

Centisome position: 28.14

GC content: 67.98

Gene sequence:

>840_bases
GTGACTACCACCCCCTCAGCCGCCGCCAGCCTGGCGGATCGCCTTGAAGCCCTGCTGCCACAAACCCAATGCACCAAGTG
CGGGTTCGATGGCTGCCGCCCCTACGCCGAAGCCATGGCGCGCGGTGAAGCGGCAAGCAACCGTTGCCCCCCGGGCGGCG
CCGAAGGCATCGTGCGGCTGTCAGCGGTGCTCGGCGTCGCGCCACAGCCGCTCGACCCGGAACGCGGCGTGGAGCAACCC
CGCGCGGTCGCCCGGATCGAAGAATCGCTCTGTATCGGCTGCACGCTGTGTATCCAGGCCTGCCCAGTCGATGCCATCGT
CGGTGCGCCCAAGCAGATGCACACCGTCCTGCCAGACTGGTGCACGGGCTGCGACTTGTGCGTGACGCCCTGCCCGGTCG
ACTGCATCGAGATGATTCCGGTCACCGGCGAGCAAACGGGATGGGCTGCGTGGTCACAGGAACAGGCCGACGCGGCACAC
GCGCGCTACGCCGCACGCGGCGTGCGGCTGGTGCGGGAGCGCGAGGAAAACGATGCAAGGCTGGCCGCCAAGGCCGCGGC
CAAACTCGAGGCGCTGCAGGCCGAGCCCGTCGCCAACACCGCGGAACAGGAAGCCCAGGCGCGCAAGAAGGCGATCATCC
AGGCGGCCATTGAACGCGCGCGACAGAAGCAGGCTGCGGCCCGGCCGCTCAACACTGAGAACGTTTCGCCGGCCGTCCAG
GCGCAGATCGACGCTGCCGAAGCACGGCGGGCAAAGCTTGGCATGACCACGCACGAACCGGCCGGCGAGCAGGGCAACAA
ACAGGAAAACAAGCAGGACAACAACAACCCTTCGACATGA

Upstream 100 bases:

>100_bases
TTTTCTGGCCCGCGACGAAATCGGGGATAATCCTTGCCGCGCACACGCTCGCCAGAAGCGTGCCAAATTCCAGCCGTCCC
TCGATATACGTTTCGCAGTC

Downstream 100 bases:

>100_bases
ACTCCGCCAAGTGCCGCGCCATCTTCGAAACCCTGCGTGAGGTCAATCCGACGCCGACCACGGAGCTGGAGTACAGCTCG
CCGTTCGAATTGCTGATCGC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTTTPSAAASLADRLEALLPQTQCTKCGFDGCRPYAEAMARGEAASNRCPPGGAEGIVRLSAVLGVAPQPLDPERGVEQP
RAVARIEESLCIGCTLCIQACPVDAIVGAPKQMHTVLPDWCTGCDLCVTPCPVDCIEMIPVTGEQTGWAAWSQEQADAAH
ARYAARGVRLVREREENDARLAAKAAAKLEALQAEPVANTAEQEAQARKKAIIQAAIERARQKQAAARPLNTENVSPAVQ
AQIDAAEARRAKLGMTTHEPAGEQGNKQENKQDNNNPST

Sequences:

>Translated_279_residues
MTTTPSAAASLADRLEALLPQTQCTKCGFDGCRPYAEAMARGEAASNRCPPGGAEGIVRLSAVLGVAPQPLDPERGVEQP
RAVARIEESLCIGCTLCIQACPVDAIVGAPKQMHTVLPDWCTGCDLCVTPCPVDCIEMIPVTGEQTGWAAWSQEQADAAH
ARYAARGVRLVREREENDARLAAKAAAKLEALQAEPVANTAEQEAQARKKAIIQAAIERARQKQAAARPLNTENVSPAVQ
AQIDAAEARRAKLGMTTHEPAGEQGNKQENKQDNNNPST
>Mature_278_residues
TTTPSAAASLADRLEALLPQTQCTKCGFDGCRPYAEAMARGEAASNRCPPGGAEGIVRLSAVLGVAPQPLDPERGVEQPR
AVARIEESLCIGCTLCIQACPVDAIVGAPKQMHTVLPDWCTGCDLCVTPCPVDCIEMIPVTGEQTGWAAWSQEQADAAHA
RYAARGVRLVREREENDARLAAKAAAKLEALQAEPVANTAEQEAQARKKAIIQAAIERARQKQAAARPLNTENVSPAVQA
QIDAAEARRAKLGMTTHEPAGEQGNKQENKQDNNNPST

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=139, Percent_Identity=51.7985611510791, Blast_Score=151, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 29610; Mature: 29478

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTPSAAASLADRLEALLPQTQCTKCGFDGCRPYAEAMARGEAASNRCPPGGAEGIVRL
CCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
SAVLGVAPQPLDPERGVEQPRAVARIEESLCIGCTLCIQACPVDAIVGAPKQMHTVLPDW
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCHHH
CTGCDLCVTPCPVDCIEMIPVTGEQTGWAAWSQEQADAAHARYAARGVRLVREREENDAR
HCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LAAKAAAKLEALQAEPVANTAEQEAQARKKAIIQAAIERARQKQAAARPLNTENVSPAVQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AQIDAAEARRAKLGMTTHEPAGEQGNKQENKQDNNNPST
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCC
>Mature Secondary Structure 
TTTPSAAASLADRLEALLPQTQCTKCGFDGCRPYAEAMARGEAASNRCPPGGAEGIVRL
CCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHH
SAVLGVAPQPLDPERGVEQPRAVARIEESLCIGCTLCIQACPVDAIVGAPKQMHTVLPDW
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHCHHH
CTGCDLCVTPCPVDCIEMIPVTGEQTGWAAWSQEQADAAHARYAARGVRLVREREENDAR
HCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LAAKAAAKLEALQAEPVANTAEQEAQARKKAIIQAAIERARQKQAAARPLNTENVSPAVQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AQIDAAEARRAKLGMTTHEPAGEQGNKQENKQDNNNPST
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA