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The map label for this gene is cyoA [H]

Identifier: 94309893

GI number: 94309893

Start: 1033351

End: 1034319

Strand: Direct

Name: cyoA [H]

Synonym: Rmet_0948

Alternate gene names: 94309893

Gene position: 1033351-1034319 (Clockwise)

Preceding gene: 94309892

Following gene: 94309894

Centisome position: 26.31

GC content: 59.96

Gene sequence:

>969_bases
ATGAAGAAACCGAAAATGCCGCCCCTGATGCGGTACCTGCCTTGCCTTGGCCTGCTCCTGTTGGCCGGCTGCGACTTCGC
GCTGATGAACCCGAAAGGGCAAGTCGGCGTCGACATCAAGGGCATCATCCTGATCGCCACCTGGCTGATGCTGCTGGTCG
TCGTACCGGTCATCATCCTGACGCTCGTGTTTGCGTGGAAGTATCGCGCCAGCAACACGTCTGCTGAATACGATCCGAAC
TGGTCGCACTCCACCCGCATCGAAGTGGTGGTTTGGCTGATCCCCTGCCTGATCATCATCGCGCTGGGCATCATCACCTG
GAAGTCGTCGCACGATCTCGACCCGTACAAGCCGCTCGAGTCGAACGTCAAGCCGGTGACCGTGGAAGCCGTGGCGATGA
ACTGGAAATGGCTGTTCATCTATCCGGAACTGAAGATCGCGACGGTGAACCAGCTCGCGCTGCCGGTGAACACGCCGGTG
AACTTCAAGATCACGTCGGATTCGATCATGAATTCGTTCTTCATCCCGCAACTGGGTAGCCAGGTTTACGCCATGGCTGG
GATGGAGACCAAGCTGCACCTCATCGCCAATGAAGCCGGCACGTTTGACGGCATGTCCGCCAACTACAGCGGCGGCGGCT
TCTCGGGCATGAAGTTCAAGGCCATCGCCATGTCGAACTTCGAGTTCGACAAGTGGGTGGAAAAGGTGCGCGCGTCCGAA
AAGCAGCTCGCGTCCGAGGACTACAAGGTCCTGGCCAAGCCGAGCGAAGCGGAACCGGTGACGTACTTCGGCAAGGTCGA
AGACGGTCTGTACACCGGCATCCTGCATCAGTACATGGGCGGCGACGGCCATGCAATGGCCCGCGAAGGTTTTGATGGCG
GTCCGGTCTGCACGTCGCGTAACACGCTCGGTGAAGAGCGGGTGTCCATGGCCACGCCGGCCAAGCCGGCGCTGGGCGCG
CAAATCTAG

Upstream 100 bases:

>100_bases
GTCCTCCGGTTTTCCCCAGCCCAGCCCGCCAGTTGCCCCGTGCAGCAGGTAGGCGGTGCCACGCTTGTGCACAGGCGTGG
CGCAACCAGACCGTCGTGAC

Downstream 100 bases:

>100_bases
GAGCAATGATGTTTGGCAAATTGAGTTTGTCGGCGATTCCGTTTCATGAGCCGATCATCATGATCACGCTGAGCTGCGTG
GCCCTTGGCGGGCTGGCGCT

Product: cytochrome o ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome o subunit 2; Cytochrome o ubiquinol oxidase subunit 2; Oxidase BO(3) subunit 2; Ubiquinol oxidase polypeptide II [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKKPKMPPLMRYLPCLGLLLLAGCDFALMNPKGQVGVDIKGIILIATWLMLLVVVPVIILTLVFAWKYRASNTSAEYDPN
WSHSTRIEVVVWLIPCLIIIALGIITWKSSHDLDPYKPLESNVKPVTVEAVAMNWKWLFIYPELKIATVNQLALPVNTPV
NFKITSDSIMNSFFIPQLGSQVYAMAGMETKLHLIANEAGTFDGMSANYSGGGFSGMKFKAIAMSNFEFDKWVEKVRASE
KQLASEDYKVLAKPSEAEPVTYFGKVEDGLYTGILHQYMGGDGHAMAREGFDGGPVCTSRNTLGEERVSMATPAKPALGA
QI

Sequences:

>Translated_322_residues
MKKPKMPPLMRYLPCLGLLLLAGCDFALMNPKGQVGVDIKGIILIATWLMLLVVVPVIILTLVFAWKYRASNTSAEYDPN
WSHSTRIEVVVWLIPCLIIIALGIITWKSSHDLDPYKPLESNVKPVTVEAVAMNWKWLFIYPELKIATVNQLALPVNTPV
NFKITSDSIMNSFFIPQLGSQVYAMAGMETKLHLIANEAGTFDGMSANYSGGGFSGMKFKAIAMSNFEFDKWVEKVRASE
KQLASEDYKVLAKPSEAEPVTYFGKVEDGLYTGILHQYMGGDGHAMAREGFDGGPVCTSRNTLGEERVSMATPAKPALGA
QI
>Mature_322_residues
MKKPKMPPLMRYLPCLGLLLLAGCDFALMNPKGQVGVDIKGIILIATWLMLLVVVPVIILTLVFAWKYRASNTSAEYDPN
WSHSTRIEVVVWLIPCLIIIALGIITWKSSHDLDPYKPLESNVKPVTVEAVAMNWKWLFIYPELKIATVNQLALPVNTPV
NFKITSDSIMNSFFIPQLGSQVYAMAGMETKLHLIANEAGTFDGMSANYSGGGFSGMKFKAIAMSNFEFDKWVEKVRASE
KQLASEDYKVLAKPSEAEPVTYFGKVEDGLYTGILHQYMGGDGHAMAREGFDGGPVCTSRNTLGEERVSMATPAKPALGA
QI

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786635, Length=288, Percent_Identity=53.8194444444444, Blast_Score=329, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012141
- InterPro:   IPR010514
- InterPro:   IPR008972
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759
- InterPro:   IPR006333 [H]

Pfam domain/function: PF00116 COX2; PF06481 COX_ARM [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35459; Mature: 35459

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50999 COX2_TM ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPKMPPLMRYLPCLGLLLLAGCDFALMNPKGQVGVDIKGIILIATWLMLLVVVPVIIL
CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLVFAWKYRASNTSAEYDPNWSHSTRIEVVVWLIPCLIIIALGIITWKSSHDLDPYKPLE
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHH
SNVKPVTVEAVAMNWKWLFIYPELKIATVNQLALPVNTPVNFKITSDSIMNSFFIPQLGS
CCCCEEEEEEEEEEEEEEEEECCEEEEEECEEEEECCCCEEEEECCHHHHHHHCCHHHCC
QVYAMAGMETKLHLIANEAGTFDGMSANYSGGGFSGMKFKAIAMSNFEFDKWVEKVRASE
CEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
KQLASEDYKVLAKPSEAEPVTYFGKVEDGLYTGILHQYMGGDGHAMAREGFDGGPVCTSR
HHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCEECCC
NTLGEERVSMATPAKPALGAQI
CCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKPKMPPLMRYLPCLGLLLLAGCDFALMNPKGQVGVDIKGIILIATWLMLLVVVPVIIL
CCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
TLVFAWKYRASNTSAEYDPNWSHSTRIEVVVWLIPCLIIIALGIITWKSSHDLDPYKPLE
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHH
SNVKPVTVEAVAMNWKWLFIYPELKIATVNQLALPVNTPVNFKITSDSIMNSFFIPQLGS
CCCCEEEEEEEEEEEEEEEEECCEEEEEECEEEEECCCCEEEEECCHHHHHHHCCHHHCC
QVYAMAGMETKLHLIANEAGTFDGMSANYSGGGFSGMKFKAIAMSNFEFDKWVEKVRASE
CEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHH
KQLASEDYKVLAKPSEAEPVTYFGKVEDGLYTGILHQYMGGDGHAMAREGFDGGPVCTSR
HHHHCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCEECCC
NTLGEERVSMATPAKPALGAQI
CCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]