| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
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The map label for this gene is cyoB [H]
Identifier: 94309894
GI number: 94309894
Start: 1034328
End: 1036301
Strand: Direct
Name: cyoB [H]
Synonym: Rmet_0949
Alternate gene names: 94309894
Gene position: 1034328-1036301 (Clockwise)
Preceding gene: 94309893
Following gene: 94309895
Centisome position: 26.33
GC content: 61.85
Gene sequence:
>1974_bases ATGTTTGGCAAATTGAGTTTGTCGGCGATTCCGTTTCATGAGCCGATCATCATGATCACGCTGAGCTGCGTGGCCCTTGG CGGGCTGGCGCTGCTCGGTGCGATCACGTACTTCAAGAAGTGGGACTACCTGTGGACCGAGTGGATTACCTCGGTCGATC ACAAGCGCATTGGCGTGATGTATTCGCTGGTGGCGCTGATCATGCTGCTGCGCGGCTTTGCCGACGCCGTCATGATGCGT ACCCAGCTGGCGGTTGCCACCAACGGCTCCACCGGCTTCCTGCCGCCCGAGCACTATGACCAGGTGTTCACGGCCCACGG CGTGATCATGATCTTCTTCGTGGCCATGCCGCTGATGACGGGTCTGATGAACCTCGTGGTGCCCCTGCAGATCGGCGCGC GCGACGTGGCGTTCCCGTTCCTGAACACGCTGAGCTTCTGGCTGTTCGTGGCCGGCGCGATGCTCGTGAACGTCTCGCTG GGCGTTGGCGAATTCGCGCGTACCGGCTGGCTGGCCTATCCGCCGCTGTCGGGTCTGGACTACAGCCCGGGCGTGGGGGT GGACTACTACCTTTGGTCGCTGCAGATATCAGGGTTGGGGACATTGCTGACCGGCGTGAACTTCCTGGTGACCATCCTGA AGATGCGCGCCCCGGGCATGACGCTGATGCGCATGCCGGTGTTCACCTGGACGGTCCTGTGCACCAACGTGCTGATCGTG GCTGCCTTCCCGGTGCTGACGGTGTCGCTGGCACTGCTGGGCCTGGACCGCTACTTCGACATGCACTTCTTCACGAACAA TGGCGGCGGTAACGCCATGATGTACGTGAACCTGATCTGGATCTGGGGCCACCCCGAGGTCTACATCCTGATCCTGCCGG CGTTCGGTATCTTCTCGGAAATCATCTCTACGTTCTCGGGCAAGAAGCTGTTCGGCTACAAGGGGATGGTGTATGCCACC AGCGCGATCATGGTGCTGTCGTTCATCGTGTGGCTGCACCACTTCTTCACGATGGGCTCTGGCGCCAACGTGAACGCGTT CTTCGGCATCACGACGATGATCATCTCGATCCCGACGGGCGTGAAGATCTTCAACTGGCTGTTCACGATGTACCGTGGCC GCGTGCAATTCACGTCGCCGGTGCTGTGGACGCTGGGCTTCATGATCACGTTCGTGATCGGTGGCATGACCGGCGTGCTG ATGGCCGTGCCGGCTGCTGACTTCGTGCTGCACAACAGCCTGTTCCTGATTGCTCACTTCCACAACGTGATCATCGGCGG CGTGCTGTTTGGCTACCTGGCCGGCGTGACCTACTGGTGGCCGAAGGCCTTCGGCTTCAAGCTGAACGAGCGTCTGGGCA AGTGCGCCTTCTGGTGCTGGCTGGTGGGCTTCTACTTCGCCTTCATGCCGCTGTACGTGCTGGGCCTGATGGGCATGACC CGTCGTCTGAACCACACCGACAACCCGGCCTGGACGCCGTGGCTGCATCTGGCCGTGGTGGGCGTGGTGTTCGTGGCGCT GGGCATCTTCTTCCAGGTGCTGCAGATCGTCGTGTCGATCCGCGACCGCAAGAAGCTGGCAGACGTGACGGGCGACCCGT GGGGTGGCCGCACGCTGGAATGGGCAACCTCGTCGCCGCCGGCGTTCTACAACTTCGCGCACACCCCGGTGGTGCGTGAC CTGGACGCGTTTGCCGACATGAAGGCACGTGGCGAGACGATCCGCACGGATGGCTTCGAGCAGATTCACATGCCGAAGAA CACCGCGGCTGGTTTCTACATGGGTGCATTCAGCCTGGTGCTGGGCTTCGCGCTGACGTGGCACATCTGGTGGCTTGCCG CCGTGGGCCTGATCGGCATGGTCGTGGCGTTTATCCGCCGCGCCAACGATGACCACATCGATTACTACGTGCCGGCCTCC GAGGTCGAGCAGATCGAAACGCGCTACCAGCAGCGCATTGCTGCCCAGGGCTGA
Upstream 100 bases:
>100_bases GCGGTCCGGTCTGCACGTCGCGTAACACGCTCGGTGAAGAGCGGGTGTCCATGGCCACGCCGGCCAAGCCGGCGCTGGGC GCGCAAATCTAGGAGCAATG
Downstream 100 bases:
>100_bases TAACCATGTCGACAGAAGTTCTTGACCGCTTCGGGGCGAAAGCCCCCGCGCATGCGCACTCGCACGACGAGGCGCACGAC CACGCGCATCACGACACCAG
Product: cytochrome o ubiquinol oxidase subunit I
Products: NA
Alternate protein names: Cytochrome o subunit 1; Cytochrome o ubiquinol oxidase subunit 1; Oxidase BO(3) subunit 1; Ubiquinol oxidase polypeptide I [H]
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MFGKLSLSAIPFHEPIIMITLSCVALGGLALLGAITYFKKWDYLWTEWITSVDHKRIGVMYSLVALIMLLRGFADAVMMR TQLAVATNGSTGFLPPEHYDQVFTAHGVIMIFFVAMPLMTGLMNLVVPLQIGARDVAFPFLNTLSFWLFVAGAMLVNVSL GVGEFARTGWLAYPPLSGLDYSPGVGVDYYLWSLQISGLGTLLTGVNFLVTILKMRAPGMTLMRMPVFTWTVLCTNVLIV AAFPVLTVSLALLGLDRYFDMHFFTNNGGGNAMMYVNLIWIWGHPEVYILILPAFGIFSEIISTFSGKKLFGYKGMVYAT SAIMVLSFIVWLHHFFTMGSGANVNAFFGITTMIISIPTGVKIFNWLFTMYRGRVQFTSPVLWTLGFMITFVIGGMTGVL MAVPAADFVLHNSLFLIAHFHNVIIGGVLFGYLAGVTYWWPKAFGFKLNERLGKCAFWCWLVGFYFAFMPLYVLGLMGMT RRLNHTDNPAWTPWLHLAVVGVVFVALGIFFQVLQIVVSIRDRKKLADVTGDPWGGRTLEWATSSPPAFYNFAHTPVVRD LDAFADMKARGETIRTDGFEQIHMPKNTAAGFYMGAFSLVLGFALTWHIWWLAAVGLIGMVVAFIRRANDDHIDYYVPAS EVEQIETRYQQRIAAQG
Sequences:
>Translated_657_residues MFGKLSLSAIPFHEPIIMITLSCVALGGLALLGAITYFKKWDYLWTEWITSVDHKRIGVMYSLVALIMLLRGFADAVMMR TQLAVATNGSTGFLPPEHYDQVFTAHGVIMIFFVAMPLMTGLMNLVVPLQIGARDVAFPFLNTLSFWLFVAGAMLVNVSL GVGEFARTGWLAYPPLSGLDYSPGVGVDYYLWSLQISGLGTLLTGVNFLVTILKMRAPGMTLMRMPVFTWTVLCTNVLIV AAFPVLTVSLALLGLDRYFDMHFFTNNGGGNAMMYVNLIWIWGHPEVYILILPAFGIFSEIISTFSGKKLFGYKGMVYAT SAIMVLSFIVWLHHFFTMGSGANVNAFFGITTMIISIPTGVKIFNWLFTMYRGRVQFTSPVLWTLGFMITFVIGGMTGVL MAVPAADFVLHNSLFLIAHFHNVIIGGVLFGYLAGVTYWWPKAFGFKLNERLGKCAFWCWLVGFYFAFMPLYVLGLMGMT RRLNHTDNPAWTPWLHLAVVGVVFVALGIFFQVLQIVVSIRDRKKLADVTGDPWGGRTLEWATSSPPAFYNFAHTPVVRD LDAFADMKARGETIRTDGFEQIHMPKNTAAGFYMGAFSLVLGFALTWHIWWLAAVGLIGMVVAFIRRANDDHIDYYVPAS EVEQIETRYQQRIAAQG >Mature_657_residues MFGKLSLSAIPFHEPIIMITLSCVALGGLALLGAITYFKKWDYLWTEWITSVDHKRIGVMYSLVALIMLLRGFADAVMMR TQLAVATNGSTGFLPPEHYDQVFTAHGVIMIFFVAMPLMTGLMNLVVPLQIGARDVAFPFLNTLSFWLFVAGAMLVNVSL GVGEFARTGWLAYPPLSGLDYSPGVGVDYYLWSLQISGLGTLLTGVNFLVTILKMRAPGMTLMRMPVFTWTVLCTNVLIV AAFPVLTVSLALLGLDRYFDMHFFTNNGGGNAMMYVNLIWIWGHPEVYILILPAFGIFSEIISTFSGKKLFGYKGMVYAT SAIMVLSFIVWLHHFFTMGSGANVNAFFGITTMIISIPTGVKIFNWLFTMYRGRVQFTSPVLWTLGFMITFVIGGMTGVL MAVPAADFVLHNSLFLIAHFHNVIIGGVLFGYLAGVTYWWPKAFGFKLNERLGKCAFWCWLVGFYFAFMPLYVLGLMGMT RRLNHTDNPAWTPWLHLAVVGVVFVALGIFFQVLQIVVSIRDRKKLADVTGDPWGGRTLEWATSSPPAFYNFAHTPVVRD LDAFADMKARGETIRTDGFEQIHMPKNTAAGFYMGAFSLVLGFALTWHIWWLAAVGLIGMVVAFIRRANDDHIDYYVPAS EVEQIETRYQQRIAAQG
Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration. This ubiquinol oxidase shows proton pump activity across the membrane in addition to the electron transfer [H]
COG id: COG0843
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
Organism=Homo sapiens, GI251831109, Length=512, Percent_Identity=39.84375, Blast_Score=345, Evalue=8e-95, Organism=Escherichia coli, GI1786634, Length=658, Percent_Identity=69.9088145896657, Blast_Score=967, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6226519, Length=535, Percent_Identity=36.2616822429907, Blast_Score=342, Evalue=1e-94, Organism=Saccharomyces cerevisiae, GI6226524, Length=322, Percent_Identity=41.304347826087, Blast_Score=243, Evalue=7e-65, Organism=Saccharomyces cerevisiae, GI6226523, Length=248, Percent_Identity=35.0806451612903, Blast_Score=137, Evalue=4e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 - InterPro: IPR014207 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: 1.10.3.-
Molecular weight: Translated: 73298; Mature: 73298
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGKLSLSAIPFHEPIIMITLSCVALGGLALLGAITYFKKWDYLWTEWITSVDHKRIGVM CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH YSLVALIMLLRGFADAVMMRTQLAVATNGSTGFLPPEHYDQVFTAHGVIMIFFVAMPLMT HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GLMNLVVPLQIGARDVAFPFLNTLSFWLFVAGAMLVNVSLGVGEFARTGWLAYPPLSGLD HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHCCCEECCCCCCCC YSPGVGVDYYLWSLQISGLGTLLTGVNFLVTILKMRAPGMTLMRMPVFTWTVLCTNVLIV CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AAFPVLTVSLALLGLDRYFDMHFFTNNGGGNAMMYVNLIWIWGHPEVYILILPAFGIFSE HHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECHHHHHHH IISTFSGKKLFGYKGMVYATSAIMVLSFIVWLHHFFTMGSGANVNAFFGITTMIISIPTG HHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC VKIFNWLFTMYRGRVQFTSPVLWTLGFMITFVIGGMTGVLMAVPAADFVLHNSLFLIAHF HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH HNVIIGGVLFGYLAGVTYWWPKAFGFKLNERLGKCAFWCWLVGFYFAFMPLYVLGLMGMT HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRLNHTDNPAWTPWLHLAVVGVVFVALGIFFQVLQIVVSIRDRKKLADVTGDPWGGRTLE HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE WATSSPPAFYNFAHTPVVRDLDAFADMKARGETIRTDGFEQIHMPKNTAAGFYMGAFSLV ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEECCCCCCCCHHHHHHHHHH LGFALTWHIWWLAAVGLIGMVVAFIRRANDDHIDYYVPASEVEQIETRYQQRIAAQG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MFGKLSLSAIPFHEPIIMITLSCVALGGLALLGAITYFKKWDYLWTEWITSVDHKRIGVM CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH YSLVALIMLLRGFADAVMMRTQLAVATNGSTGFLPPEHYDQVFTAHGVIMIFFVAMPLMT HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH GLMNLVVPLQIGARDVAFPFLNTLSFWLFVAGAMLVNVSLGVGEFARTGWLAYPPLSGLD HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHCCCEECCCCCCCC YSPGVGVDYYLWSLQISGLGTLLTGVNFLVTILKMRAPGMTLMRMPVFTWTVLCTNVLIV CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH AAFPVLTVSLALLGLDRYFDMHFFTNNGGGNAMMYVNLIWIWGHPEVYILILPAFGIFSE HHHHHHHHHHHHHHHHHHEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECHHHHHHH IISTFSGKKLFGYKGMVYATSAIMVLSFIVWLHHFFTMGSGANVNAFFGITTMIISIPTG HHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC VKIFNWLFTMYRGRVQFTSPVLWTLGFMITFVIGGMTGVLMAVPAADFVLHNSLFLIAHF HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH HNVIIGGVLFGYLAGVTYWWPKAFGFKLNERLGKCAFWCWLVGFYFAFMPLYVLGLMGMT HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRLNHTDNPAWTPWLHLAVVGVVFVALGIFFQVLQIVVSIRDRKKLADVTGDPWGGRTLE HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE WATSSPPAFYNFAHTPVVRDLDAFADMKARGETIRTDGFEQIHMPKNTAAGFYMGAFSLV ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCEECCCCCCCCHHHHHHHHHH LGFALTWHIWWLAAVGLIGMVVAFIRRANDDHIDYYVPASEVEQIETRYQQRIAAQG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Protoheme IX (Heme B55 and B562); Copper B. [C]
Metal ions: Fe; Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]