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The map label for this gene is ygaU [H]

Identifier: 94309862

GI number: 94309862

Start: 1002089

End: 1002589

Strand: Direct

Name: ygaU [H]

Synonym: Rmet_0917

Alternate gene names: 94309862

Gene position: 1002089-1002589 (Clockwise)

Preceding gene: 94309861

Following gene: 94309863

Centisome position: 25.51

GC content: 60.68

Gene sequence:

>501_bases
ATGGGCATGTTTGACTTCATCAAGGAAGCGGGAGAGAAGCTGTTCGGCAAGGGAGAGGCCAAGGCGGCCCAGGATGCGGC
TGTGGCCGATCCGTCGACGGACAAGGTCGATGCCGCCAACCGTGCGGCTGGCGATGCCATCGAGGCTTATATCGCGCAGA
TGGGACTGTCCGCGACGGGGCTGACAGTCACGGTTGACGGCTCGCAGGGCAAGGTCACGGTCTTTGGCGTGGCGGCTGAC
CAGGCAACGCGCGAGAAGATCATTCTGTGCTGCGGCAACGTGGAAGGCGTGGATTCGGTCGAGGACAAGATGTCTGTCAA
CGTCGAATCGGACGAGTCACAATGGCACACCGTCGTGAAGGGCGACACGCTCTGGGCGATCTCCCAGGCCGCCTATGGCA
ACGGCGCCGAATACAACAAGATCTTCGAGGCCAACAAGCCGATGTTGTCGAACCCGGACAAGATCTACCCTGGTCAGAAA
CTGCGGATTCCGCCGAAGTGA

Upstream 100 bases:

>100_bases
GGCGGCAACTGATCCAACGTAGGAATAAAGGCGCTTTCGGGCGCCTTTGCTTTTCTGTAGTCTGTGCGTTGTACGTTTCA
CCCACCCTCAGGAGCACATC

Downstream 100 bases:

>100_bases
GTCGCTGGCAGATATCGGGAATGATGCGGTTGCACACACGCGCCAAACCGGATATAGTCGCCGACATGATTTCGCGCCAG
ACCCTAATCGCTCGCACCAT

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MGMFDFIKEAGEKLFGKGEAKAAQDAAVADPSTDKVDAANRAAGDAIEAYIAQMGLSATGLTVTVDGSQGKVTVFGVAAD
QATREKIILCCGNVEGVDSVEDKMSVNVESDESQWHTVVKGDTLWAISQAAYGNGAEYNKIFEANKPMLSNPDKIYPGQK
LRIPPK

Sequences:

>Translated_166_residues
MGMFDFIKEAGEKLFGKGEAKAAQDAAVADPSTDKVDAANRAAGDAIEAYIAQMGLSATGLTVTVDGSQGKVTVFGVAAD
QATREKIILCCGNVEGVDSVEDKMSVNVESDESQWHTVVKGDTLWAISQAAYGNGAEYNKIFEANKPMLSNPDKIYPGQK
LRIPPK
>Mature_165_residues
GMFDFIKEAGEKLFGKGEAKAAQDAAVADPSTDKVDAANRAAGDAIEAYIAQMGLSATGLTVTVDGSQGKVTVFGVAADQ
ATREKIILCCGNVEGVDSVEDKMSVNVESDESQWHTVVKGDTLWAISQAAYGNGAEYNKIFEANKPMLSNPDKIYPGQKL
RIPPK

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=168, Percent_Identity=44.047619047619, Blast_Score=126, Evalue=9e-31,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 17575; Mature: 17444

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMFDFIKEAGEKLFGKGEAKAAQDAAVADPSTDKVDAANRAAGDAIEAYIAQMGLSATG
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCCCCC
LTVTVDGSQGKVTVFGVAADQATREKIILCCGNVEGVDSVEDKMSVNVESDESQWHTVVK
EEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHEEEEEECCCCCEEEEEC
GDTLWAISQAAYGNGAEYNKIFEANKPMLSNPDKIYPGQKLRIPPK
CCEEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCCCCEEECCCC
>Mature Secondary Structure 
GMFDFIKEAGEKLFGKGEAKAAQDAAVADPSTDKVDAANRAAGDAIEAYIAQMGLSATG
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHCCCCCC
LTVTVDGSQGKVTVFGVAADQATREKIILCCGNVEGVDSVEDKMSVNVESDESQWHTVVK
EEEEEECCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCHHEEEEEECCCCCEEEEEC
GDTLWAISQAAYGNGAEYNKIFEANKPMLSNPDKIYPGQKLRIPPK
CCEEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]