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The map label for this gene is yedQ [H]

Identifier: 94309812

GI number: 94309812

Start: 945964

End: 947442

Strand: Reverse

Name: yedQ [H]

Synonym: Rmet_0867

Alternate gene names: 94309812

Gene position: 947442-945964 (Counterclockwise)

Preceding gene: 94309813

Following gene: 335055508

Centisome position: 24.12

GC content: 63.08

Gene sequence:

>1479_bases
TTGGCGCAAGGACCCGCCGCTTCGCGGCTCGACGATGACTATCGAACGCTGTTCCAGCTAGCGCCCGTTTCGCTGTGGCT
GGAGGATTTTAGCGCGGTGCGGCAGGCCTTCACGCAGTTGCGGGCCGATGGCGTCACCAATCTGCGCCGCCACCTGCGCG
ACAACCCCTCGGAAGTGGCACGGTGCTCTTCTCTAATTCGCGTGCTCGACGTCAACCGCCGGACGCTGGACCTCTTCCGC
GCCGTCGATCTGGATACGCTGGTTGCCAACCTCCACACCGTGTTTCGCGACGACATGTTCGATCAACACGTCGAGGAACT
CGGACAACTGTGGGACGGCGACAATCGTTTCTCGAGCCAGACCGTCAACTACACGCTCGACGGCGAACGGCTCGACATCC
GTCTGGAGGCCCGCGTCATGCCTGGGCACGAGGACGACTGGTCGCGTGTGCTGCTGTCGATCGAGGACATCACGGCCCGC
GTGCGCAATGAACGTGACCTGCGCCGGGCCCAGCAGTACGCCGTGGGCCTGTTCGAGCATTCGCCGGTATCGCTCTGGGT
GGAAGATTTCAGCGTGGTCAAGATGCTGCTCGACGAAGTCCGCGCGGCAGGGATCACGGATTTCCGCACGTTCCTGAACG
TGCACCCCGATTTCGTCTCGCGCTGCATGCAGGAGATCCGCGTGCTCGACGTCAACCAGCAGACGCTGGCGATGTTCGGC
GCACCCAGCAAGGAAATCCTGCTTTCGCGACTCGGCGACGTGTTTCGCGACGACATGCGCATCCACTTTGCCGAGCAACT
GGTCGACCTCTGGCATGAAAAGCTGTGGCAGCAACGCGAAGTCATCAACTACGCGCTGGACGGCCGCCCGGTGGACGTGT
TCATGCAGTGGTCGGTATTTCCGGGGCGAGAGGCTGACTGGGACCAGGTGCTGGTGTCGCTGACCGACATCACGGCACGC
AAGAAGGCCGAAGCCTACGTCGAGTTCCTCGGCAAGCACGATGTGCTTACCAAACTCTACAACCGCGCGTACTACGAGGA
TGAACTGGCGCGGCTGGGCCGCAAGGGGCCGTGGCCGGTCAGCGTGATCGCGGTGGACCTGAATGGACTGAAGGCCGTGA
ACGATCAGTTCGGCCACGGGGACGGCGATGGCCTGCTACGCCGCACTGGCGAAGTGCTGAAGAAAGCCGTGGGCGAACAG
GCATGCATTGCGCGCACCGGTGGCGACGAGTTCATGGTGCTGCTTCCCGGACGCGACGAACGGGGTGCAGCGACGGTGGT
GGAGCAGATCGAAGAGGTGGTCGTCCTCAACAACCAGTTCTATCCCGGGGCGCGGCTTTCATTCTCGATCGGGTCGGCCA
CCTGCATGCAGGGAGACCGCCTGACCGATGCCGTGAAAACTGCGGACAGACGGATGTACGACGCCAAGCGCGCCTACTAC
GAGGCGCTGGGCAACGAACGCGCGACGCAGAACGACTGA

Upstream 100 bases:

>100_bases
CCAACGCCAGCATCGTTCTTGCGAGATTTCTTCCCCGATTCGGGCACGCTCGCCTATCCTATTGCGCGATACGCCGAACA
CAAAAAATGGGGAGAAAAAA

Downstream 100 bases:

>100_bases
GTACGAAAAAAGCCGGCTAAGCCGGCTTTTTCATTTTCGTTTGCGGCGACGCACGTCACTCAGATAAACACGATCAACGC
CACGCCACCGATGATCAGGC

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MAQGPAASRLDDDYRTLFQLAPVSLWLEDFSAVRQAFTQLRADGVTNLRRHLRDNPSEVARCSSLIRVLDVNRRTLDLFR
AVDLDTLVANLHTVFRDDMFDQHVEELGQLWDGDNRFSSQTVNYTLDGERLDIRLEARVMPGHEDDWSRVLLSIEDITAR
VRNERDLRRAQQYAVGLFEHSPVSLWVEDFSVVKMLLDEVRAAGITDFRTFLNVHPDFVSRCMQEIRVLDVNQQTLAMFG
APSKEILLSRLGDVFRDDMRIHFAEQLVDLWHEKLWQQREVINYALDGRPVDVFMQWSVFPGREADWDQVLVSLTDITAR
KKAEAYVEFLGKHDVLTKLYNRAYYEDELARLGRKGPWPVSVIAVDLNGLKAVNDQFGHGDGDGLLRRTGEVLKKAVGEQ
ACIARTGGDEFMVLLPGRDERGAATVVEQIEEVVVLNNQFYPGARLSFSIGSATCMQGDRLTDAVKTADRRMYDAKRAYY
EALGNERATQND

Sequences:

>Translated_492_residues
MAQGPAASRLDDDYRTLFQLAPVSLWLEDFSAVRQAFTQLRADGVTNLRRHLRDNPSEVARCSSLIRVLDVNRRTLDLFR
AVDLDTLVANLHTVFRDDMFDQHVEELGQLWDGDNRFSSQTVNYTLDGERLDIRLEARVMPGHEDDWSRVLLSIEDITAR
VRNERDLRRAQQYAVGLFEHSPVSLWVEDFSVVKMLLDEVRAAGITDFRTFLNVHPDFVSRCMQEIRVLDVNQQTLAMFG
APSKEILLSRLGDVFRDDMRIHFAEQLVDLWHEKLWQQREVINYALDGRPVDVFMQWSVFPGREADWDQVLVSLTDITAR
KKAEAYVEFLGKHDVLTKLYNRAYYEDELARLGRKGPWPVSVIAVDLNGLKAVNDQFGHGDGDGLLRRTGEVLKKAVGEQ
ACIARTGGDEFMVLLPGRDERGAATVVEQIEEVVVLNNQFYPGARLSFSIGSATCMQGDRLTDAVKTADRRMYDAKRAYY
EALGNERATQND
>Mature_491_residues
AQGPAASRLDDDYRTLFQLAPVSLWLEDFSAVRQAFTQLRADGVTNLRRHLRDNPSEVARCSSLIRVLDVNRRTLDLFRA
VDLDTLVANLHTVFRDDMFDQHVEELGQLWDGDNRFSSQTVNYTLDGERLDIRLEARVMPGHEDDWSRVLLSIEDITARV
RNERDLRRAQQYAVGLFEHSPVSLWVEDFSVVKMLLDEVRAAGITDFRTFLNVHPDFVSRCMQEIRVLDVNQQTLAMFGA
PSKEILLSRLGDVFRDDMRIHFAEQLVDLWHEKLWQQREVINYALDGRPVDVFMQWSVFPGREADWDQVLVSLTDITARK
KAEAYVEFLGKHDVLTKLYNRAYYEDELARLGRKGPWPVSVIAVDLNGLKAVNDQFGHGDGDGLLRRTGEVLKKAVGEQA
CIARTGGDEFMVLLPGRDERGAATVVEQIEEVVVLNNQFYPGARLSFSIGSATCMQGDRLTDAVKTADRRMYDAKRAYYE
ALGNERATQND

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=157, Percent_Identity=38.8535031847134, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87081974, Length=148, Percent_Identity=32.4324324324324, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI145693134, Length=151, Percent_Identity=33.112582781457, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787262, Length=154, Percent_Identity=30.5194805194805, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=30.8139534883721, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=28.8235294117647, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 56190; Mature: 56059

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGPAASRLDDDYRTLFQLAPVSLWLEDFSAVRQAFTQLRADGVTNLRRHLRDNPSEVA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
RCSSLIRVLDVNRRTLDLFRAVDLDTLVANLHTVFRDDMFDQHVEELGQLWDGDNRFSSQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TVNYTLDGERLDIRLEARVMPGHEDDWSRVLLSIEDITARVRNERDLRRAQQYAVGLFEH
EEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
SPVSLWVEDFSVVKMLLDEVRAAGITDFRTFLNVHPDFVSRCMQEIRVLDVNQQTLAMFG
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHEECCCHHHHHHHC
APSKEILLSRLGDVFRDDMRIHFAEQLVDLWHEKLWQQREVINYALDGRPVDVFMQWSVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
PGREADWDQVLVSLTDITARKKAEAYVEFLGKHDVLTKLYNRAYYEDELARLGRKGPWPV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
SVIAVDLNGLKAVNDQFGHGDGDGLLRRTGEVLKKAVGEQACIARTGGDEFMVLLPGRDE
EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEECCCCCEEEEECCCCC
RGAATVVEQIEEVVVLNNQFYPGARLSFSIGSATCMQGDRLTDAVKTADRRMYDAKRAYY
CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EALGNERATQND
HHHCCCCCCCCC
>Mature Secondary Structure 
AQGPAASRLDDDYRTLFQLAPVSLWLEDFSAVRQAFTQLRADGVTNLRRHLRDNPSEVA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
RCSSLIRVLDVNRRTLDLFRAVDLDTLVANLHTVFRDDMFDQHVEELGQLWDGDNRFSSQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
TVNYTLDGERLDIRLEARVMPGHEDDWSRVLLSIEDITARVRNERDLRRAQQYAVGLFEH
EEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
SPVSLWVEDFSVVKMLLDEVRAAGITDFRTFLNVHPDFVSRCMQEIRVLDVNQQTLAMFG
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHEECCCHHHHHHHC
APSKEILLSRLGDVFRDDMRIHFAEQLVDLWHEKLWQQREVINYALDGRPVDVFMQWSVF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
PGREADWDQVLVSLTDITARKKAEAYVEFLGKHDVLTKLYNRAYYEDELARLGRKGPWPV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
SVIAVDLNGLKAVNDQFGHGDGDGLLRRTGEVLKKAVGEQACIARTGGDEFMVLLPGRDE
EEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEECCCCCEEEEECCCCC
RGAATVVEQIEEVVVLNNQFYPGARLSFSIGSATCMQGDRLTDAVKTADRRMYDAKRAYY
CHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EALGNERATQND
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]