Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 94309766

GI number: 94309766

Start: 893694

End: 894611

Strand: Reverse

Name: yddE [C]

Synonym: Rmet_0821

Alternate gene names: 94309766

Gene position: 894611-893694 (Counterclockwise)

Preceding gene: 94309767

Following gene: 94309765

Centisome position: 22.77

GC content: 65.58

Gene sequence:

>918_bases
ATGGCGTGGAGGCTCCCGTACACTTGCCGAGTCGCTGATTTCTGGAAAGCCGCCCCCATGCCTACTTTTGCCTACCGAAT
CGTCAACGTATTCGCCGAGTCCACCTTCGGCGGCAATCCCCTGTGTGTGTTCGAGGACGCGCGCGGACTCGATGACGCGA
CCATGCAGGCGCTGGCCCTGCAGTTCAACTTGTCGGAGACCACCTTCGTGCTCCCATCCGACAACGCCAACGCCGCCGTG
CGCATATTCACGCCGGGATACGAGATGCGCTTCGCAGGCCATCCGACGCTTGGCACGGCGCACGTAGTACGGGACCTGAT
GAAAACGGGTGACGCGCTTTCGCTCGAATTCAAGGCCGGCGTGGTCCCGGTCACGGCCAAGGGTGACCGCTGGACACTGA
CCGCGCCGCACACGGGCGCGCCGAAGACCGCCCCGGCGGGCCTGCCGGATGCCGAGATGGCATCGTTGCTGGGCCTGACC
ATGGACGATCTTGCCGGATCACCGATGTGGGTCGACACCGGCGCCGACCAATTGCTGGTCCCCGTGAAGACGCCCGACGC
AGTACGTCGCGCACAACCGGACAGCAGCCGGCTCGATCGCTGGCCGCAAAGCAGCCTGGGCCGCAAGACCGCCTATGTCT
TTGCATTCGACCCGGAACAGCCAGGCAAGGCACTCGTGCGGTATTTCTTCACCAAGCAAGGCGGCGGCGTAGCGGAAGAC
CCAGGCACTGGCTCCGCTTGCGCCAACCTGGGCGGATGGCTCGTAGCAACGGGCCACCAGTTGCCCGCCAGCTACGAGGT
GGACCAGGGCGAGTTCGTCGATCGCCGCTGCCGGCTGGACCTGAACGTGACCACCGAGGGCGCGATTCGCGTGGGCGGCC
GCGTGATCGAACTCGGTCGCGGCACCGTGACACTCTGA

Upstream 100 bases:

>100_bases
TGCAGAACGCGCCAATCGTAGTTCGCTCAAATGCGCGCGCCGCTTGCATCAGGTCCCGACTGCAACTGTTCCGCTGCATT
CGCGTGAAACTGTGCATGGC

Downstream 100 bases:

>100_bases
CAAGGACTCTGCCATGCCATCGCACGACATTGCCACACTTGCCGATCTCGAATCGTTGTACGCCGAACCGTCAGGGGCAT
CGCTTGCCAAGGAGGTGGAC

Product: Phenazine biosynthesis PhzC/PhzF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAWRLPYTCRVADFWKAAPMPTFAYRIVNVFAESTFGGNPLCVFEDARGLDDATMQALALQFNLSETTFVLPSDNANAAV
RIFTPGYEMRFAGHPTLGTAHVVRDLMKTGDALSLEFKAGVVPVTAKGDRWTLTAPHTGAPKTAPAGLPDAEMASLLGLT
MDDLAGSPMWVDTGADQLLVPVKTPDAVRRAQPDSSRLDRWPQSSLGRKTAYVFAFDPEQPGKALVRYFFTKQGGGVAED
PGTGSACANLGGWLVATGHQLPASYEVDQGEFVDRRCRLDLNVTTEGAIRVGGRVIELGRGTVTL

Sequences:

>Translated_305_residues
MAWRLPYTCRVADFWKAAPMPTFAYRIVNVFAESTFGGNPLCVFEDARGLDDATMQALALQFNLSETTFVLPSDNANAAV
RIFTPGYEMRFAGHPTLGTAHVVRDLMKTGDALSLEFKAGVVPVTAKGDRWTLTAPHTGAPKTAPAGLPDAEMASLLGLT
MDDLAGSPMWVDTGADQLLVPVKTPDAVRRAQPDSSRLDRWPQSSLGRKTAYVFAFDPEQPGKALVRYFFTKQGGGVAED
PGTGSACANLGGWLVATGHQLPASYEVDQGEFVDRRCRLDLNVTTEGAIRVGGRVIELGRGTVTL
>Mature_304_residues
AWRLPYTCRVADFWKAAPMPTFAYRIVNVFAESTFGGNPLCVFEDARGLDDATMQALALQFNLSETTFVLPSDNANAAVR
IFTPGYEMRFAGHPTLGTAHVVRDLMKTGDALSLEFKAGVVPVTAKGDRWTLTAPHTGAPKTAPAGLPDAEMASLLGLTM
DDLAGSPMWVDTGADQLLVPVKTPDAVRRAQPDSSRLDRWPQSSLGRKTAYVFAFDPEQPGKALVRYFFTKQGGGVAEDP
GTGSACANLGGWLVATGHQLPASYEVDQGEFVDRRCRLDLNVTTEGAIRVGGRVIELGRGTVTL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=238, Percent_Identity=30.672268907563, Blast_Score=79, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321818, Length=242, Percent_Identity=29.7520661157025, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32796; Mature: 32664

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWRLPYTCRVADFWKAAPMPTFAYRIVNVFAESTFGGNPLCVFEDARGLDDATMQALAL
CCCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHEEEEE
QFNLSETTFVLPSDNANAAVRIFTPGYEMRFAGHPTLGTAHVVRDLMKTGDALSLEFKAG
EEECCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECC
VVPVTAKGDRWTLTAPHTGAPKTAPAGLPDAEMASLLGLTMDDLAGSPMWVDTGADQLLV
EEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCEEEECCCCEEEE
PVKTPDAVRRAQPDSSRLDRWPQSSLGRKTAYVFAFDPEQPGKALVRYFFTKQGGGVAED
EECCCHHHHHCCCCHHHHHCCCCHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
PGTGSACANLGGWLVATGHQLPASYEVDQGEFVDRRCRLDLNVTTEGAIRVGGRVIELGR
CCCCHHHHHCCCEEEEECCCCCCCEECCCCCCCCCEEEEEEEECCCCEEEECCEEEEECC
GTVTL
CEECC
>Mature Secondary Structure 
AWRLPYTCRVADFWKAAPMPTFAYRIVNVFAESTFGGNPLCVFEDARGLDDATMQALAL
CCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHEEEEE
QFNLSETTFVLPSDNANAAVRIFTPGYEMRFAGHPTLGTAHVVRDLMKTGDALSLEFKAG
EEECCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECC
VVPVTAKGDRWTLTAPHTGAPKTAPAGLPDAEMASLLGLTMDDLAGSPMWVDTGADQLLV
EEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCEEEECCCCEEEE
PVKTPDAVRRAQPDSSRLDRWPQSSLGRKTAYVFAFDPEQPGKALVRYFFTKQGGGVAED
EECCCHHHHHCCCCHHHHHCCCCHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
PGTGSACANLGGWLVATGHQLPASYEVDQGEFVDRRCRLDLNVTTEGAIRVGGRVIELGR
CCCCHHHHHCCCEEEEECCCCCCCEECCCCCCCCCEEEEEEEECCCCEEEECCEEEEECC
GTVTL
CEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]