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The map label for this gene is rimM

Identifier: 94309694

GI number: 94309694

Start: 825838

End: 826500

Strand: Direct

Name: rimM

Synonym: Rmet_0749

Alternate gene names: 94309694

Gene position: 825838-826500 (Clockwise)

Preceding gene: 94309693

Following gene: 94309695

Centisome position: 21.02

GC content: 66.67

Gene sequence:

>663_bases
GTGACTGGCAATGCCTCCGGCCGCAAGCCGTTGAATCTGGCCGCTACGCAAGGCGGTGCCTCCGGCCGGCAGAAAAAACT
GCCCGCCGCGCTGTTGTTCACGGACACCCTGCCCGACGATCTGGTCGAGGTTGGCTACGTGGGCGCGGCATATGGTATCC
GGGGCTGGATCAAAGTCCAGCCACATGCGGACGACGCCTCCGCATTGCTCCACGCCCGCCGTTGGTGGCTGCTTCGCGCG
CCGCCGGCCGGCGTGGTGTCGGCGCCGGCGCAGTCGGCCGAGGCTGTCAGCATCAAGATCTCCCAGTCGCGTGAACACAG
CGGTACCGTGGTTGCGCAGCCGGCCGGCGTTTCGGACCGCAGTGTGGCCGAAATGCTCAAGGGGCGTCGTGTCTGGGTCC
GGCGCGCGGATTTTCCCGCGGCGGAAGAGGGTGAGTTTTACTGGGTCGACCTGATCGGTTGTGCCGTGGTCAACGAGCAG
GGCGAAGCGCTCGGCGAGGTGACCGGCCTGATCGACAATGGCGCCCATCAGATCCTTCAGGTGGCCTACGAGCTGCCGGA
CGGTAAGGCCGCTGAGCGGCTGATCCCGTTTGTCGACGCGTTCCTGCGGACGGTGGATACACCGGCCAGGCGGATCGTGG
TGGACTGGGGGCTCGACTACTGA

Upstream 100 bases:

>100_bases
GTTGCCCGCCTGGTCAAGCAAGCCGGCAAGGCTGCAGCCTGATAGGTCTTGCGCGGCGTGCCTGTATGGCGCGCCGATGC
AGAACTGACGCACCGCTGAA

Downstream 100 bases:

>100_bases
AGTGTCAGGGGAGGCGCGGATGCAGTTCGATGTAATCACGCTGTTTCCCGAGATGTTTCGCGCGCTGACCGATTGGGGTA
TCACCAGCCGGGCAGCCAAG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTGNASGRKPLNLAATQGGASGRQKKLPAALLFTDTLPDDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLRA
PPAGVVSAPAQSAEAVSIKISQSREHSGTVVAQPAGVSDRSVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGCAVVNEQ
GEALGEVTGLIDNGAHQILQVAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVDWGLDY

Sequences:

>Translated_220_residues
MTGNASGRKPLNLAATQGGASGRQKKLPAALLFTDTLPDDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLRA
PPAGVVSAPAQSAEAVSIKISQSREHSGTVVAQPAGVSDRSVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGCAVVNEQ
GEALGEVTGLIDNGAHQILQVAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVDWGLDY
>Mature_219_residues
TGNASGRKPLNLAATQGGASGRQKKLPAALLFTDTLPDDLVEVGYVGAAYGIRGWIKVQPHADDASALLHARRWWLLRAP
PAGVVSAPAQSAEAVSIKISQSREHSGTVVAQPAGVSDRSVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGCAVVNEQG
EALGEVTGLIDNGAHQILQVAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVDWGLDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=181, Percent_Identity=30.939226519337, Blast_Score=110, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_RALME (Q1LQE1)

Other databases:

- EMBL:   CP000352
- RefSeq:   YP_582904.1
- ProteinModelPortal:   Q1LQE1
- SMR:   Q1LQE1
- STRING:   Q1LQE1
- GeneID:   4037540
- GenomeReviews:   CP000352_GR
- KEGG:   rme:Rmet_0749
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q1LQE1
- ProtClustDB:   PRK00122
- BioCyc:   RMET266264:RMET_0749-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 23635; Mature: 23504

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNASGRKPLNLAATQGGASGRQKKLPAALLFTDTLPDDLVEVGYVGAAYGIRGWIKVQ
CCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHHHCCCCEEEEEE
PHADDASALLHARRWWLLRAPPAGVVSAPAQSAEAVSIKISQSREHSGTVVAQPAGVSDR
CCCCHHHHHHHHHHEEEEECCCCCCEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCHH
SVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGCAVVNEQGEALGEVTGLIDNGAHQILQ
HHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHH
VAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVDWGLDY
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure 
TGNASGRKPLNLAATQGGASGRQKKLPAALLFTDTLPDDLVEVGYVGAAYGIRGWIKVQ
CCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHHCCHHHHCCCCEEEEEE
PHADDASALLHARRWWLLRAPPAGVVSAPAQSAEAVSIKISQSREHSGTVVAQPAGVSDR
CCCCHHHHHHHHHHEEEEECCCCCCEECCCCCCCEEEEEEECCCCCCCEEEECCCCCCHH
SVAEMLKGRRVWVRRADFPAAEEGEFYWVDLIGCAVVNEQGEALGEVTGLIDNGAHQILQ
HHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCHHHHHHH
VAYELPDGKAAERLIPFVDAFLRTVDTPARRIVVDWGLDY
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA