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The map label for this gene is yciM [H]

Identifier: 94309670

GI number: 94309670

Start: 801797

End: 803026

Strand: Direct

Name: yciM [H]

Synonym: Rmet_0725

Alternate gene names: 94309670

Gene position: 801797-803026 (Clockwise)

Preceding gene: 94309669

Following gene: 94309671

Centisome position: 20.41

GC content: 64.15

Gene sequence:

>1230_bases
ATGATGTTTGAAACCTGGTGGCTGCTGGCGTTGCCACTTGTCTTTGGCCTTGGCTGGATGGCGGCGCGCTTTGATCTGCG
CCAGCTCATCAGCGAGCAGGGCGCCTTGCCTCGCTCGTACTTCAAGGGCCTCAATTTCCTGCTGAACGAACAACCTGATC
AGGCAATCGACGCTTTTGTTGAAGTGGCGCGCCTCGATCCGGAAACCACCGAGCTTCACTTCGCGCTCGGCGCGCTGTTT
CGCCGCCGTGGCGAAACCGAACGCGCGATTCGCGTGCACCAGAACCTTGCCACGCGTCCCGATTTGCCAGAGCCCGAACG
CGAGCACGCGCTATATGAGTTGGGGCAGGACTTCCTGCGCGCCGGCCTGCTAGACCGTGCGGAAGAGTCGCTGCGCCGGC
TGATGTCCGGTCCCTACGCGGCCTCGGCCAAGCGCGTGCTGCTCGAACTGTATGAAGTCGAGAAGGAGTGGCAGAAAGCC
ATCGAAGCGGCGCGCGAACTGCAAGCACTCGACCAGCAGGACTATCGTGTGCAGATCGCCCAGTTCTGCTGCGAACTGGC
CCAAGACGCGCTGCTGAAGAAGCGTCCCGAGGATGCGGTGGAATGGTTGCGCCGTGCCACGCAGGAGAATCCCGCCAACG
TGCGCGCGCCGATCCTGCTTGGCGACGTCTCCGCCGCAGGCGGTGACACTGAGGGCGCGCTCAAGCAATGGCTGGCGATC
GAAGCGCAGGATGCCGCCTATGTGCCGCTCGTCGCCGACAAGGTCGTGAAGGCGTATGCGGCGCTCGGTGAACAGGGCAA
GGCACTGGAGTGGTTGCACGGCCTGCTGAAGGGCAACCTGGCCCCCGAACTGCTCGATACGGCGTATCGCACCGAACTTG
AAGTGAACGGCCCCGTCGCCGCGGCTACTTTGATGCGCGAGCAACTGCGTCGTCAGCCGACGCTGCTCGCCTTGACCAAG
TATTTCGAGGCGCAGGCCGCCGAGAACCAGGCGGCGCAGAAGCAGTCGGCCGAATCCGCCGAACCCGCCGAAGGCGGTGG
GGATGCCGTGATTGACCCGCAGGCGCAGGAAACGGCCGCCATCCGCGATCTGCTGCAACTGCGCACTCGCAATCTGGCGC
GTTATACCTGCCGCGAATGTGGCTTCCGCGCCCGCCTTTTCTACTGGCAATGCCCCGGCTGCAACCGCTGGGAAACGTAT
GCGCCACGCCGCTCCGAAGCGCTGGGCTAA

Upstream 100 bases:

>100_bases
GGCGCTTGGCGAAGCGCGGGCCACGTCGCCCGCCGAGGCAGTGCCGCCCGAGGCCAAGCCCGGCGTTCCTTATAACGTAG
TCGGTCCGAAAGTCTGACCC

Downstream 100 bases:

>100_bases
GCCGCTACACGCAACGCCCCGGGCGATCAAGATCATTACTATTCTGGAGCTTCCGCAATGAAAGTCACGATTATCGGTAG
CGGCTATGTCGGTCTGGTGA

Product: tetratricopeptide repeat protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MMFETWWLLALPLVFGLGWMAARFDLRQLISEQGALPRSYFKGLNFLLNEQPDQAIDAFVEVARLDPETTELHFALGALF
RRRGETERAIRVHQNLATRPDLPEPEREHALYELGQDFLRAGLLDRAEESLRRLMSGPYAASAKRVLLELYEVEKEWQKA
IEAARELQALDQQDYRVQIAQFCCELAQDALLKKRPEDAVEWLRRATQENPANVRAPILLGDVSAAGGDTEGALKQWLAI
EAQDAAYVPLVADKVVKAYAALGEQGKALEWLHGLLKGNLAPELLDTAYRTELEVNGPVAAATLMREQLRRQPTLLALTK
YFEAQAAENQAAQKQSAESAEPAEGGGDAVIDPQAQETAAIRDLLQLRTRNLARYTCRECGFRARLFYWQCPGCNRWETY
APRRSEALG

Sequences:

>Translated_409_residues
MMFETWWLLALPLVFGLGWMAARFDLRQLISEQGALPRSYFKGLNFLLNEQPDQAIDAFVEVARLDPETTELHFALGALF
RRRGETERAIRVHQNLATRPDLPEPEREHALYELGQDFLRAGLLDRAEESLRRLMSGPYAASAKRVLLELYEVEKEWQKA
IEAARELQALDQQDYRVQIAQFCCELAQDALLKKRPEDAVEWLRRATQENPANVRAPILLGDVSAAGGDTEGALKQWLAI
EAQDAAYVPLVADKVVKAYAALGEQGKALEWLHGLLKGNLAPELLDTAYRTELEVNGPVAAATLMREQLRRQPTLLALTK
YFEAQAAENQAAQKQSAESAEPAEGGGDAVIDPQAQETAAIRDLLQLRTRNLARYTCRECGFRARLFYWQCPGCNRWETY
APRRSEALG
>Mature_409_residues
MMFETWWLLALPLVFGLGWMAARFDLRQLISEQGALPRSYFKGLNFLLNEQPDQAIDAFVEVARLDPETTELHFALGALF
RRRGETERAIRVHQNLATRPDLPEPEREHALYELGQDFLRAGLLDRAEESLRRLMSGPYAASAKRVLLELYEVEKEWQKA
IEAARELQALDQQDYRVQIAQFCCELAQDALLKKRPEDAVEWLRRATQENPANVRAPILLGDVSAAGGDTEGALKQWLAI
EAQDAAYVPLVADKVVKAYAALGEQGKALEWLHGLLKGNLAPELLDTAYRTELEVNGPVAAATLMREQLRRQPTLLALTK
YFEAQAAENQAAQKQSAESAEPAEGGGDAVIDPQAQETAAIRDLLQLRTRNLARYTCRECGFRARLFYWQCPGCNRWETY
APRRSEALG

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=396, Percent_Identity=32.0707070707071, Blast_Score=197, Evalue=9e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46049; Mature: 46049

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFETWWLLALPLVFGLGWMAARFDLRQLISEQGALPRSYFKGLNFLLNEQPDQAIDAFV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EVARLDPETTELHFALGALFRRRGETERAIRVHQNLATRPDLPEPEREHALYELGQDFLR
HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AGLLDRAEESLRRLMSGPYAASAKRVLLELYEVEKEWQKAIEAARELQALDQQDYRVQIA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
QFCCELAQDALLKKRPEDAVEWLRRATQENPANVRAPILLGDVSAAGGDTEGALKQWLAI
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH
EAQDAAYVPLVADKVVKAYAALGEQGKALEWLHGLLKGNLAPELLDTAYRTELEVNGPVA
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEECCCCHH
AATLMREQLRRQPTLLALTKYFEAQAAENQAAQKQSAESAEPAEGGGDAVIDPQAQETAA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
IRDLLQLRTRNLARYTCRECGFRARLFYWQCPGCNRWETYAPRRSEALG
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MMFETWWLLALPLVFGLGWMAARFDLRQLISEQGALPRSYFKGLNFLLNEQPDQAIDAFV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
EVARLDPETTELHFALGALFRRRGETERAIRVHQNLATRPDLPEPEREHALYELGQDFLR
HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AGLLDRAEESLRRLMSGPYAASAKRVLLELYEVEKEWQKAIEAARELQALDQQDYRVQIA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
QFCCELAQDALLKKRPEDAVEWLRRATQENPANVRAPILLGDVSAAGGDTEGALKQWLAI
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH
EAQDAAYVPLVADKVVKAYAALGEQGKALEWLHGLLKGNLAPELLDTAYRTELEVNGPVA
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCEECCCCHH
AATLMREQLRRQPTLLALTKYFEAQAAENQAAQKQSAESAEPAEGGGDAVIDPQAQETAA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
IRDLLQLRTRNLARYTCRECGFRARLFYWQCPGCNRWETYAPRRSEALG
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]