Click here to switch to the map view.

The map label for this gene is 94309562

Identifier: 94309562

GI number: 94309562

Start: 676887

End: 677321

Strand: Reverse

Name: 94309562

Synonym: Rmet_0617

Alternate gene names: NA

Gene position: 677321-676887 (Counterclockwise)

Preceding gene: 94309563

Following gene: 94309559

Centisome position: 17.24

GC content: 60.92

Gene sequence:

>435_bases
GTGACGCGCGGCGGGCCGGGTCTCTTCGAAGCCGTCACCGGGTTCTTTGCGAATGGCGTTGCCGTTGACGAGTTAGATGC
GTCGACCCAGACCTTCCTGTCGGTCCAGGACAACATCCAGCGCATCCTTAACAGTCGGCGCGGTGGCCTTGCGCATCTGC
CTGACTACGGACTGGGAGATCTGTCCCGCATCTACCGCCACCTGCCTGCCTCGGCGCACACGCTCAAGCGGGAAATTGAG
ACGACACTCCTGCGCTACGAGCCGAGATTGAAGGCCCTCGACCTCGAGATCGAGGAACCCGAACCGGGCATGCTGTTGAG
CTTCACGATGACCTGCCATTTGCACCAATCTGGACTGGTGCAATTCGGCACGCATTTCATGCCGGACGGCAAGACACGGC
TCAAGCTGCTGCGGTCGGCGCACGATCATGACTAA

Upstream 100 bases:

>100_bases
CCAACAGGCAGGTACCTGCGTCTATCCGGCTCTCGTTCTCCGAGGAGGACGGCATTGGGCTGGACTTCGATGATGCGGCA
ACCACCGCGGAGGAATACGC

Downstream 100 bases:

>100_bases
CCACCAATCCGCGCTGAGCGCTGCCAGGGATCTCAGCGGCACATGCCGCTGCACACTACTAAAGCGCCGAACGCGCCGAC
GGTGGCGCCAACGACATTGC

Product: hypothetical protein

Products: NA

Alternate protein names: GPW/Gp25 Family Protein; Type VI Secretion System Lysozyme Protein; Type VI Secretion System Protein; Type VI Secretion System Lysozyme-Related Family Protein; Type VI Secretion System Lysozyme-Like Protein

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MTRGGPGLFEAVTGFFANGVAVDELDASTQTFLSVQDNIQRILNSRRGGLAHLPDYGLGDLSRIYRHLPASAHTLKREIE
TTLLRYEPRLKALDLEIEEPEPGMLLSFTMTCHLHQSGLVQFGTHFMPDGKTRLKLLRSAHDHD

Sequences:

>Translated_144_residues
MTRGGPGLFEAVTGFFANGVAVDELDASTQTFLSVQDNIQRILNSRRGGLAHLPDYGLGDLSRIYRHLPASAHTLKREIE
TTLLRYEPRLKALDLEIEEPEPGMLLSFTMTCHLHQSGLVQFGTHFMPDGKTRLKLLRSAHDHD
>Mature_143_residues
TRGGPGLFEAVTGFFANGVAVDELDASTQTFLSVQDNIQRILNSRRGGLAHLPDYGLGDLSRIYRHLPASAHTLKREIET
TLLRYEPRLKALDLEIEEPEPGMLLSFTMTCHLHQSGLVQFGTHFMPDGKTRLKLLRSAHDHD

Specific function: Unknown

COG id: COG3518

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16096; Mature: 15964

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRGGPGLFEAVTGFFANGVAVDELDASTQTFLSVQDNIQRILNSRRGGLAHLPDYGLGD
CCCCCCHHHHHHHHHHHCCEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LSRIYRHLPASAHTLKREIETTLLRYEPRLKALDLEIEEPEPGMLLSFTMTCHLHQSGLV
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCHH
QFGTHFMPDGKTRLKLLRSAHDHD
HHCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRGGPGLFEAVTGFFANGVAVDELDASTQTFLSVQDNIQRILNSRRGGLAHLPDYGLGD
CCCCCHHHHHHHHHHHCCEEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LSRIYRHLPASAHTLKREIETTLLRYEPRLKALDLEIEEPEPGMLLSFTMTCHLHQSGLV
HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEEEECCCCHH
QFGTHFMPDGKTRLKLLRSAHDHD
HHCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA