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The map label for this gene is allS [H]

Identifier: 94309455

GI number: 94309455

Start: 541123

End: 542058

Strand: Direct

Name: allS [H]

Synonym: Rmet_0510

Alternate gene names: 94309455

Gene position: 541123-542058 (Clockwise)

Preceding gene: 94309452

Following gene: 94309460

Centisome position: 13.78

GC content: 66.24

Gene sequence:

>936_bases
GTGCGAGAGGGGAGAAAGCCAACGAGAACGCACACCATGAGCCTGTCCCTCGAACAGTTGCAAGCCTTTGCCGCCGCGGC
CGAAACCGGATCGTTCTCCGCGGCGGCCCGCCAACTTGGCAAGGCACAGTCCGTCGTCAGCGCCGCCGTCGCCAATCTGG
AGATCGATCTCGGCAACGCGCTGTTCGACCGCACCGCCCGTTACCCGGTCCTGACGCCGGCCGGCGAGCGGTTGCTGGTT
GAGGCGCGTGTGATTCTGGAGCGTTGCGAGCACTTTCGGGGCGTCGCCAAGAGCCTGGGCGAAGGTGTCGAGTCCCGTCT
CACGCTGGCCGTCGACGAGTTATATCCGGAAGAGACCCTTGGCGTGCTGCTCGACGAGTTCTCGCAACGCTTCCCGTCGG
TCGAACTCGAACTGCTGTTTCCGCTGATGGAGGACGTGAGCAGGCTGGTGCTGAGCCAGTGCGCGGACCTCGGCATCATG
TGGCGCCAGGAGATCCTGCCGCCCGAACTCGGCTTCCATGCGCTGGGCTGGGTGCCGATGCCGATCATCTGCGCGCCCGA
CCATCCCCTTGCCGCGCAGCCGCGCGTGGACTTCGAAGAGTTGAAACGCTACCGGCAGTTGATGGTGGCCACGCGCAGCG
ACAGCGAGGAAAAGAAACGGCTGCGTGTGGCGGCCGAAGTCTGGTGGGTGGAAAGCCAGTGGGTGATCGTCGAACTGGTC
AAGCGCAAGCTCGGCTGGGCGTTCGTGCCCTGGCACGTGGCGGCCAACTCGCCCGCCGCTGCCGGGCTGGTATCGCCGCA
GCTGACCTTCCAGGACCAGGATTGGCCCGTGGCGATGGAAATCGTCTGGCACAAGCAGCGGCCGCTGGGCAAGGCGGCCA
CATGGCTGCGGGAGCGGGTCAGTCAGCAGCCGTTGCCGATGCCTGGGGGGCGGTAG

Upstream 100 bases:

>100_bases
AGCTAATCGCAAGTTGGGTAGTATCGGTTATTCCGATAGAAGGGGATTCCCCTGCGACCGGCTTTCCCCCCCGTCTGTCC
CCGCCTGCCCCCTCCTGCTT

Downstream 100 bases:

>100_bases
CGCGCTGCAGCGCCGCTATTGAGTCTGCCACCGAGTCTGTTACTGCGCCGTCGATGCAGGCGCGGTAGCTGGCGCGGTGC
TATCGACCTTCCCCACCTCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MREGRKPTRTHTMSLSLEQLQAFAAAAETGSFSAAARQLGKAQSVVSAAVANLEIDLGNALFDRTARYPVLTPAGERLLV
EARVILERCEHFRGVAKSLGEGVESRLTLAVDELYPEETLGVLLDEFSQRFPSVELELLFPLMEDVSRLVLSQCADLGIM
WRQEILPPELGFHALGWVPMPIICAPDHPLAAQPRVDFEELKRYRQLMVATRSDSEEKKRLRVAAEVWWVESQWVIVELV
KRKLGWAFVPWHVAANSPAAAGLVSPQLTFQDQDWPVAMEIVWHKQRPLGKAATWLRERVSQQPLPMPGGR

Sequences:

>Translated_311_residues
MREGRKPTRTHTMSLSLEQLQAFAAAAETGSFSAAARQLGKAQSVVSAAVANLEIDLGNALFDRTARYPVLTPAGERLLV
EARVILERCEHFRGVAKSLGEGVESRLTLAVDELYPEETLGVLLDEFSQRFPSVELELLFPLMEDVSRLVLSQCADLGIM
WRQEILPPELGFHALGWVPMPIICAPDHPLAAQPRVDFEELKRYRQLMVATRSDSEEKKRLRVAAEVWWVESQWVIVELV
KRKLGWAFVPWHVAANSPAAAGLVSPQLTFQDQDWPVAMEIVWHKQRPLGKAATWLRERVSQQPLPMPGGR
>Mature_311_residues
MREGRKPTRTHTMSLSLEQLQAFAAAAETGSFSAAARQLGKAQSVVSAAVANLEIDLGNALFDRTARYPVLTPAGERLLV
EARVILERCEHFRGVAKSLGEGVESRLTLAVDELYPEETLGVLLDEFSQRFPSVELELLFPLMEDVSRLVLSQCADLGIM
WRQEILPPELGFHALGWVPMPIICAPDHPLAAQPRVDFEELKRYRQLMVATRSDSEEKKRLRVAAEVWWVESQWVIVELV
KRKLGWAFVPWHVAANSPAAAGLVSPQLTFQDQDWPVAMEIVWHKQRPLGKAATWLRERVSQQPLPMPGGR

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=290, Percent_Identity=27.9310344827586, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI145693105, Length=206, Percent_Identity=28.6407766990291, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1786713, Length=176, Percent_Identity=34.0909090909091, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786508, Length=205, Percent_Identity=26.8292682926829, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789492, Length=305, Percent_Identity=26.2295081967213, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786401, Length=133, Percent_Identity=38.3458646616541, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787949, Length=174, Percent_Identity=31.6091954022989, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1790262, Length=260, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=281, Percent_Identity=25.9786476868327, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=243, Percent_Identity=27.5720164609054, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=200, Percent_Identity=29, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34902; Mature: 34902

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREGRKPTRTHTMSLSLEQLQAFAAAAETGSFSAAARQLGKAQSVVSAAVANLEIDLGNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCHH
LFDRTARYPVLTPAGERLLVEARVILERCEHFRGVAKSLGEGVESRLTLAVDELYPEETL
HHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GVLLDEFSQRFPSVELELLFPLMEDVSRLVLSQCADLGIMWRQEILPPELGFHALGWVPM
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCC
PIICAPDHPLAAQPRVDFEELKRYRQLMVATRSDSEEKKRLRVAAEVWWVESQWVIVELV
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECCCHHHHHHH
KRKLGWAFVPWHVAANSPAAAGLVSPQLTFQDQDWPVAMEIVWHKQRPLGKAATWLRERV
HHHHCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHH
SQQPLPMPGGR
CCCCCCCCCCC
>Mature Secondary Structure
MREGRKPTRTHTMSLSLEQLQAFAAAAETGSFSAAARQLGKAQSVVSAAVANLEIDLGNA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEECCHH
LFDRTARYPVLTPAGERLLVEARVILERCEHFRGVAKSLGEGVESRLTLAVDELYPEETL
HHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GVLLDEFSQRFPSVELELLFPLMEDVSRLVLSQCADLGIMWRQEILPPELGFHALGWVPM
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCC
PIICAPDHPLAAQPRVDFEELKRYRQLMVATRSDSEEKKRLRVAAEVWWVESQWVIVELV
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEECCCHHHHHHH
KRKLGWAFVPWHVAANSPAAAGLVSPQLTFQDQDWPVAMEIVWHKQRPLGKAATWLRERV
HHHHCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHH
SQQPLPMPGGR
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA