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The map label for this gene is fimZ [H]

Identifier: 94309404

GI number: 94309404

Start: 487717

End: 488340

Strand: Direct

Name: fimZ [H]

Synonym: Rmet_0459

Alternate gene names: 94309404

Gene position: 487717-488340 (Clockwise)

Preceding gene: 94309402

Following gene: 94309405

Centisome position: 12.42

GC content: 63.78

Gene sequence:

>624_bases
ATGTCCAATGCGCTAGTAATCGACAATCATCCTGGTGTACGCGCGGCGGCCTCCGCCGCGCTGATGGAAAGCATGGGCTT
CGAGGAAGTCCGCCTGGCCACAACTGCCACTGAAGCCTTGGAGGAACTGCGCACAAGACAGCGCCCCGACCTGGTAATGG
TGGACCTGGATCTCGGCGATCTTCCGGGCGATGCCGTGGTGGAGGAGGTGGTGTCCCATCACCCGGCAACGCGCGTGCTG
GTGCTGTCAGCCGCATCCGGCGCTGCCGAACGCGCGTTGCTCAGCGGCGCGCACGGGTATGTCGACAAGGGCAACGGCAT
CGGCGGTATCGAGCATGCCGTGCGCGCGGTCATGAGTGGCTATGCTGCATTTCCGCTGGCCCTGCTTACGACGATTCGCC
GCGCGGCCAATGCGCCGGCCGATCCGATCTTGGTCTTGAGCCGACGCGAGCTGACCGTCATGCGCTTCCTCGCGGCCGGG
CATTCCAATAAGGCGATCTCCGTGGTGCTCGGTATCAGCAACAAGACCGTGAGCTCGCACAAGGCCAGCATCATGACCAA
GCTGGGGTTCCGTTCCCTGATCGATCTGGCCGAGTTTGCGCGGCGGCATCATCTGGCCTGCTGA

Upstream 100 bases:

>100_bases
TGGCCTGGAAGTTTCGAAGTGCATCGCTGGCGCCTTCCACATCCGGCGCATGACCGGACGACCTATGCTCTCCGCACGTT
CGTTTCATCGGAGGAATCGT

Downstream 100 bases:

>100_bases
CGGGCGCCTGGGCGGTCGCGCGATCGGGTGGGCGTGCAGCGCCGGCCTCGGCTTATCCGGCATAATCCCAGCGATTCGCC
GCCGCTGCAGCGGCGGCACC

Product: putative two component transcriptional regulator, LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MSNALVIDNHPGVRAAASAALMESMGFEEVRLATTATEALEELRTRQRPDLVMVDLDLGDLPGDAVVEEVVSHHPATRVL
VLSAASGAAERALLSGAHGYVDKGNGIGGIEHAVRAVMSGYAAFPLALLTTIRRAANAPADPILVLSRRELTVMRFLAAG
HSNKAISVVLGISNKTVSSHKASIMTKLGFRSLIDLAEFARRHHLAC

Sequences:

>Translated_207_residues
MSNALVIDNHPGVRAAASAALMESMGFEEVRLATTATEALEELRTRQRPDLVMVDLDLGDLPGDAVVEEVVSHHPATRVL
VLSAASGAAERALLSGAHGYVDKGNGIGGIEHAVRAVMSGYAAFPLALLTTIRRAANAPADPILVLSRRELTVMRFLAAG
HSNKAISVVLGISNKTVSSHKASIMTKLGFRSLIDLAEFARRHHLAC
>Mature_206_residues
SNALVIDNHPGVRAAASAALMESMGFEEVRLATTATEALEELRTRQRPDLVMVDLDLGDLPGDAVVEEVVSHHPATRVLV
LSAASGAAERALLSGAHGYVDKGNGIGGIEHAVRAVMSGYAAFPLALLTTIRRAANAPADPILVLSRRELTVMRFLAAGH
SNKAISVVLGISNKTVSSHKASIMTKLGFRSLIDLAEFARRHHLAC

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=34.2995169082126, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788712, Length=212, Percent_Identity=31.1320754716981, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788222, Length=211, Percent_Identity=27.0142180094787, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788521, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21891; Mature: 21759

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNALVIDNHPGVRAAASAALMESMGFEEVRLATTATEALEELRTRQRPDLVMVDLDLGD
CCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
LPGDAVVEEVVSHHPATRVLVLSAASGAAERALLSGAHGYVDKGNGIGGIEHAVRAVMSG
CCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
YAAFPLALLTTIRRAANAPADPILVLSRRELTVMRFLAAGHSNKAISVVLGISNKTVSSH
HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
KASIMTKLGFRSLIDLAEFARRHHLAC
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNALVIDNHPGVRAAASAALMESMGFEEVRLATTATEALEELRTRQRPDLVMVDLDLGD
CCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
LPGDAVVEEVVSHHPATRVLVLSAASGAAERALLSGAHGYVDKGNGIGGIEHAVRAVMSG
CCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
YAAFPLALLTTIRRAANAPADPILVLSRRELTVMRFLAAGHSNKAISVVLGISNKTVSSH
HHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHH
KASIMTKLGFRSLIDLAEFARRHHLAC
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]