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The map label for this gene is ydeD [C]

Identifier: 94309386

GI number: 94309386

Start: 467806

End: 468711

Strand: Reverse

Name: ydeD [C]

Synonym: Rmet_0441

Alternate gene names: 94309386

Gene position: 468711-467806 (Counterclockwise)

Preceding gene: 94309387

Following gene: 94309380

Centisome position: 11.93

GC content: 66.67

Gene sequence:

>906_bases
ATGAGCGCGCAAGCAATGACGCGGCGCCCGCTGGACGGCACGGCCATCGGGTTGATGGTGCTGCTGTGCGCCGCCTGGGG
GCTCCAGCAGGTGATCATCAAGGTCACCGCGCCGCTGATGGGCGCCGTGCTGCAGGCGGGCGTGCGATCCGCCATCGCGG
CGCTGCTGGTGTTCGGCTTCGCGGCCTGGCGTGGCACGCCGCTCTGGGAACGCGATGGCACATTGCGCGCGGGACTGGTA
GCGGGACTGCTGTTCGGGGCCGAGTTCTTCTGCATCTTCGTTGGACTCGGCCACACCACCGCATCCCGCATGGCGGTGTT
TCTCTATACAGCCCCGATCTTCACCGCACTCGGCCTGCACCTGTTCGTGCCGGGCGAGCATCTGCACCGGGGCCAGTGGC
TCGGCGTGGTTCTCGCGTTCTGCGGCATTGCGCTGGCCTTCGCCGACGGCATTGCCTCGCCTTCCACGCAAGGCAGCACG
GTGATTGGCGATGTCCTGGGCATGGTGGCCGGTGCCCTGTGGGCGGCGACAACCGTCGTCGTGCGCGGCAGCAAGCTGTC
TGGTGCCCCTGCCAGCAAGACGCTGCTCTACCAGTTGGGCGTGTCGGCGGTGATGCTGCTGTTGATGGCGCTGGCGGCAG
GCCAGGCGCATACGGTGGAAATCACAGGCTTCGTCGTGGCCAGCCTGTTCTACCAGTCGGTGCTGATCGCGTTCGCGAGC
TACCTGATCTGGTTCTGGCTTCTGCGCCAGTATCTGGCGTCACGGCTATCGGTCTTCTCGTTCCTGACGCCGCTGTTCGG
CGTGGCATTCGGCGTGCTGCTCATGCACGACCACGTCGGCGTGCGGTTCGCCTTGGCGGCGGTGATGGTGCTGGGGGGGA
TTGTGCTGGTGAATCGACGGGCGTAG

Upstream 100 bases:

>100_bases
CGGCACCACGGTGATCGCGTTCGTAGAGGACCCGGACGGCTACAAGATCGAACTGATCGAGCGTCACTCGACGCGCGACG
CTGCCCGCCCGTAACGCGCA

Downstream 100 bases:

>100_bases
TGAACGCCGTCGGTTTGTCGCCCTCTCCCGCGTAGCGGGCAAGGGCGACAACGATCAGTGCCGAATCACTGCGGGAACGA
GAACATCCCCAGCGCGCCGC

Product: putative permease, DMT superfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSAQAMTRRPLDGTAIGLMVLLCAAWGLQQVIIKVTAPLMGAVLQAGVRSAIAALLVFGFAAWRGTPLWERDGTLRAGLV
AGLLFGAEFFCIFVGLGHTTASRMAVFLYTAPIFTALGLHLFVPGEHLHRGQWLGVVLAFCGIALAFADGIASPSTQGST
VIGDVLGMVAGALWAATTVVVRGSKLSGAPASKTLLYQLGVSAVMLLLMALAAGQAHTVEITGFVVASLFYQSVLIAFAS
YLIWFWLLRQYLASRLSVFSFLTPLFGVAFGVLLMHDHVGVRFALAAVMVLGGIVLVNRRA

Sequences:

>Translated_301_residues
MSAQAMTRRPLDGTAIGLMVLLCAAWGLQQVIIKVTAPLMGAVLQAGVRSAIAALLVFGFAAWRGTPLWERDGTLRAGLV
AGLLFGAEFFCIFVGLGHTTASRMAVFLYTAPIFTALGLHLFVPGEHLHRGQWLGVVLAFCGIALAFADGIASPSTQGST
VIGDVLGMVAGALWAATTVVVRGSKLSGAPASKTLLYQLGVSAVMLLLMALAAGQAHTVEITGFVVASLFYQSVLIAFAS
YLIWFWLLRQYLASRLSVFSFLTPLFGVAFGVLLMHDHVGVRFALAAVMVLGGIVLVNRRA
>Mature_300_residues
SAQAMTRRPLDGTAIGLMVLLCAAWGLQQVIIKVTAPLMGAVLQAGVRSAIAALLVFGFAAWRGTPLWERDGTLRAGLVA
GLLFGAEFFCIFVGLGHTTASRMAVFLYTAPIFTALGLHLFVPGEHLHRGQWLGVVLAFCGIALAFADGIASPSTQGSTV
IGDVLGMVAGALWAATTVVVRGSKLSGAPASKTLLYQLGVSAVMLLLMALAAGQAHTVEITGFVVASLFYQSVLIAFASY
LIWFWLLRQYLASRLSVFSFLTPLFGVAFGVLLMHDHVGVRFALAAVMVLGGIVLVNRRA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31752; Mature: 31621

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQAMTRRPLDGTAIGLMVLLCAAWGLQQVIIKVTAPLMGAVLQAGVRSAIAALLVFGF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAWRGTPLWERDGTLRAGLVAGLLFGAEFFCIFVGLGHTTASRMAVFLYTAPIFTALGLH
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LFVPGEHLHRGQWLGVVLAFCGIALAFADGIASPSTQGSTVIGDVLGMVAGALWAATTVV
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
VRGSKLSGAPASKTLLYQLGVSAVMLLLMALAAGQAHTVEITGFVVASLFYQSVLIAFAS
EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHH
YLIWFWLLRQYLASRLSVFSFLTPLFGVAFGVLLMHDHVGVRFALAAVMVLGGIVLVNRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEECC
A
C
>Mature Secondary Structure 
SAQAMTRRPLDGTAIGLMVLLCAAWGLQQVIIKVTAPLMGAVLQAGVRSAIAALLVFGF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]