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The map label for this gene is ybaO [H]

Identifier: 94309340

GI number: 94309340

Start: 423273

End: 423731

Strand: Reverse

Name: ybaO [H]

Synonym: Rmet_0395

Alternate gene names: 94309340

Gene position: 423731-423273 (Counterclockwise)

Preceding gene: 94309341

Following gene: 94309335

Centisome position: 10.79

GC content: 62.53

Gene sequence:

>459_bases
ATGGACCGTTATGACCGCCAGATCCTCAGCATTTTGCAGGAGGACGCCACCGTGCCCGTCGCCGAGATCGGCGAACAGGT
CGGCCTGACATCGACGCCCTGCTGGCGCCGAGTCCAAAAGCTGGAAGAGTCCGGCATCATCCGCAAGCGCGTGGCGCTGC
TCGACCCCGCCAAGCTGAACGTCGGCGTGACCGTCTTCGTCTCGGTCCGCACCAACCAGCACAGCGAAAAATGGCTCAAG
ACCTTCCACGGGCTGGTGGCGTCGATCCCGGAAGTCACCGAGTTCTATCGCATGGCGGGCGATACCGACTACCTGCTGCG
CGTGGTGGTGCCCGATATCGCCGCCTATGACGCCGTGTACAAGAAGCTGATCCAGGGCACCGAGCTTGCTGACGTCAGTT
CCAGCTTCGCGATGGAGCAGATCAAGTACACGACGGCGCTGCCGCTGGATTACGCGTAG

Upstream 100 bases:

>100_bases
CGGCGTCAACCTGCTGGTAGACACCGTCGTCAGCTGACACTCGCACCGCAAGGGCGGCGGGTGCCCGGCACCCCTTTCGC
CCCCTTGATTGCGAGACCCC

Downstream 100 bases:

>100_bases
CGGGTCAGGCTTCAGAGAAGCCGGTCCGCTCTCCCCCGGAGCGGGAAAGCGGAGAAACACCGAAGCCTCACCCTCGATGC
GCCCAGCCCGTCATCCGTTT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MDRYDRQILSILQEDATVPVAEIGEQVGLTSTPCWRRVQKLEESGIIRKRVALLDPAKLNVGVTVFVSVRTNQHSEKWLK
TFHGLVASIPEVTEFYRMAGDTDYLLRVVVPDIAAYDAVYKKLIQGTELADVSSSFAMEQIKYTTALPLDYA

Sequences:

>Translated_152_residues
MDRYDRQILSILQEDATVPVAEIGEQVGLTSTPCWRRVQKLEESGIIRKRVALLDPAKLNVGVTVFVSVRTNQHSEKWLK
TFHGLVASIPEVTEFYRMAGDTDYLLRVVVPDIAAYDAVYKKLIQGTELADVSSSFAMEQIKYTTALPLDYA
>Mature_152_residues
MDRYDRQILSILQEDATVPVAEIGEQVGLTSTPCWRRVQKLEESGIIRKRVALLDPAKLNVGVTVFVSVRTNQHSEKWLK
TFHGLVASIPEVTEFYRMAGDTDYLLRVVVPDIAAYDAVYKKLIQGTELADVSSSFAMEQIKYTTALPLDYA

Specific function: Represses the secondary, H(+)-coupled glutamate uptake system (Gluemp) genes [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=49.6688741721854, Blast_Score=167, Evalue=2e-43,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=35.1351351351351, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17094; Mature: 17094

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRYDRQILSILQEDATVPVAEIGEQVGLTSTPCWRRVQKLEESGIIRKRVALLDPAKLN
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCC
VGVTVFVSVRTNQHSEKWLKTFHGLVASIPEVTEFYRMAGDTDYLLRVVVPDIAAYDAVY
CCEEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KKLIQGTELADVSSSFAMEQIKYTTALPLDYA
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDRYDRQILSILQEDATVPVAEIGEQVGLTSTPCWRRVQKLEESGIIRKRVALLDPAKLN
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCC
VGVTVFVSVRTNQHSEKWLKTFHGLVASIPEVTEFYRMAGDTDYLLRVVVPDIAAYDAVY
CCEEEEEEEECCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KKLIQGTELADVSSSFAMEQIKYTTALPLDYA
HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665494 [H]