| Definition | Cupriavidus metallidurans CH34 chromosome, complete genome. |
|---|---|
| Accession | NC_007973 |
| Length | 3,928,089 |
Click here to switch to the map view.
The map label for this gene is secD [H]
Identifier: 335055638
GI number: 335055638
Start: 3202006
End: 3203916
Strand: Direct
Name: secD [H]
Synonym: NA
Alternate gene names: 335055638
Gene position: 3202006-3203916 (Clockwise)
Preceding gene: 335055637
Following gene: 94311879
Centisome position: 81.52
GC content: 65.04
Gene sequence:
>1911_bases ATGCGCGCGATTATCGACCACGCCAACCGCAATGACTGGCCAACGATGAATCGTTATCCGATTTGGAAATACATCGTGAT TCTGGTGGCTCTGGCCATCGGCATCACCTACACCATGCCGAACTTCTTCGGCGAGGCGCCCGCCGTCCAGGTATCGTCGG CCAAGGCCACGGTCAAGGTCGACCTGTCCATGCAGAAGCATGTCGAGGAGATCCTGGCGCAGAACCAGCTGCAGCCTGAC GGGGTGTTCTTCGACGTGTCCGGCCAGTCCGGCTCGGTCAAGGCGCGCTTCCGCACCACTGACGAGCAGCTCAAGGCCAA GGACGTGCTGTCGCGCTCGCTGAACCCCGACGCGAACGATGCGACCTATGTCGTGGCGCTGAACCTGCTGTCCGGTTCGC CGCGCTGGCTGACCGCGCTGCACGCGCTGCCCATGTACCTGGGTCTGGATCTGCGCGGTGGCGTGCACTTCCTGCTACAG GTGGACATGAAGGGCGCCGTCGACAAGAAGCTCGACAGCCTGGCCGGCGATGCGCGCACGCTGCTGCGCGACAAGAACAT CCGCCACGGCGGCATTGACCGTGACGGCGAGCGTCTGACCGTGCGCTTCAGCAATGGCGACGACGCGGAACGCGCGCGCG GCATCCTGGCCGACAACCTGCGCGAGCTGGCCTTCACGATGGACGGCACGAACATCGTCGGCACGTTCACGGAAGCCGCC CGCAAGACCGTGCAGGACGGCGCCGTCAAGCAGAACATCACCACCCTGCACAATCGTGTGAACGAACTTGGCGTGGCAGA GCCGGTGATCCAGCAGCAAGGCTCCGACCGCATTGTGGTGCAGCTGCCGGGCGTGCAGGACACCGCCAAGGCCAAGGACA TCATCGGCCGTACCGCCACGCTCGAGGCGCGCCTGGCCGATCCGGATGTGCGCAACCCGCGCCCGGGTGACCCCGTGCCG TTCGGCGACGAGCTGTTCACGCAAGGCAACAGCGCCCCGGTGCTGCTGCGCAAGCAGGTGATCTTCACCGGCGACCGTAT CGAAAGCGCCTCGGCCGGTTTCGACCAGAACCAGCGCCCGTCCGTCAACATCAAGCTCGACGCCCAAGGCGGCCGCATGC TGCGTGACGTGTCGCGGGAGAACATTGGCAAGCCGATGGGCATCGTCCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACT GTGGCGACGATCCAGTCCGAGCTTGGCTCGAGCTTCCAGATCACCGGTTCTTACTCGACCGAAGCCGCCAACGACCTGGC CCTGCTGCTGCGCGCCGGCTCGCTGGCCGCCCCGATGGAAATCATCGAGGAACGCACAATCGGCCCGTCGCTGGGCGCGG ACAACATCCAGAAGGGCTTTGACTCGGTGGCCTACGGCTTCGCCGCGATCGCCGTCTTCATGGTGCTGTACTACATGCTG TTCGGCGTGTTCTCCGTGATCGCGCTGGGCGTGAACCTGCTGCTGCTGGTGGCGGTGCTGTCGATGCTGCAGGCCACGCT GACGCTGCCTGGCATCGCCGCTATCGCGCTGGTGCTCGGCATGGCCATCGACGCGAACGTGCTGATCAACGAGCGGATCC GCGAGGAACTGCGCGCGGGCGCATCGCCGCAGATGTCGATCGCCATCGGCTTCGAGCGTGCCTGGGCCACGATTCTCGAC TCGAACGTGACCACGCTGATCGCTGGCCTGGCGCTGCTGGCCTTTGGCTCGGGCCCGGTGCGCGGCTTTGCCGTGGTGCA CTGCCTGGGCATTCTGACCTCGATGTTCTCGGCGGTGTTCTTCAACCGCGGCCTGGTCAACCTTTGGTACGGCCGCAAGA AGAAGCTCCAGGGCTTGGCCATCGGTCAGATCTGGAAGCCGGACACCACCGACACCCCGGTCGCCAAGTAA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: SecYEG protein translocase auxiliary subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
NA
Sequences:
>Translated_636_residues MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDLSMQKHVEEILAQNQLQPD GVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDANDATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQ VDMKGAVDKKLDSLAGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVP FGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLT VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMSIAIGFERAWATILD SNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK >Mature_636_residues MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDLSMQKHVEEILAQNQLQPD GVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDANDATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQ VDMKGAVDKKLDSLAGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVP FGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLT VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAGASPQMSIAIGFERAWATILD SNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK
Specific function: Involved in protein export [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=623, Percent_Identity=42.8571428571429, Blast_Score=488, Evalue=1e-139,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 68778; Mature: 68778
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKV CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCEEEEE DLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDAND ECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC ATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDART CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH LLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA HHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHH RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTAT HHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCE LEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRP EEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC SVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQITGSYST CEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHCCCEEEECCCCC EAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML CHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC ASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVF CCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH FNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK HCCCCCEECCCCCHHCCCEEECCCCCCCCCCCCCCC >Mature Secondary Structure MRAIIDHANRNDWPTMNRYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKV CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCEEEECCCEEEEE DLSMQKHVEEILAQNQLQPDGVFFDVSGQSGSVKARFRTTDEQLKAKDVLSRSLNPDAND ECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCC ATYVVALNLLSGSPRWLTALHALPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSLAGDART CEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHH LLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRELAFTMDGTNIVGTFTEAA HHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCEEEHHHHHH RKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQLPGVQDTAKAKDIIGRTAT HHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCE LEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIFTGDRIESASAGFDQNQRP EEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC SVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTVATIQSELGSSFQITGSYST CEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHCCCEEEECCCCC EAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYYML CHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRAG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC ASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVF CCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH FNRGLVNLWYGRKKKLQGLAIGQIWKPDTTDTPVAK HCCCCCEECCCCCHHCCCEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]