BacMap

Definition	Psychrobacter cryohalolentis K5 chromosome, complete genome.
Accession	NC_007969
Length	3,059,876

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The map label for this gene is hetN [H]

Identifier: 93007254

GI number: 93007254

Start: 3003416

End: 3004240

Strand: Direct

Name: hetN [H]

Synonym: Pcryo_2430

Alternate gene names: 93007254

Gene position: 3003416-3004240 (Clockwise)

Preceding gene: 93007253

Following gene: 93007255

Centisome position: 98.15

GC content: 44.36

Gene sequence:

>825_bases
ATGGGCGAAACGGAAAGGATTCCTATGAAAACCAACTATAAAGATTTGACCATTTGGATAACAGGCGCGTCAAGCGGTAT
CGGTGAAGCATTAACCATCGCCTTTGCCAAACGCGGCGCTCGTATTATTCTAAGTGGACGTGATGAAGAAAACCTAGCAC
TGGTAAAAAGCCGCTGTAAAAATAGTAAAAAACATATCGTTATCCCTTTTGATATAACCGATGTTGAGCAAGCAAAACTA
GCATACGCTACCGCTAAAACTCAAGCAGGAAAAATCGATTGGCTGATTAATAATGCAGGTATCAGTCAACGCGCGCTTAT
CATGGATACCACTGAAGACGTCGAGCGACAAATTATGGACATAGATTACTTTGCGCAGACGCGTCTGAGCAGATTGGTAT
TGCCAGATATGCTCGAACAAGGTGGCGGCAAAATAGTGATGATATCAAGTGTTGCAGGGTTACTCGGTACACAATATCGC
GGTGCTTATGGTGCTGCAAAAGCGGCTATTCATATGTGGGCGAACAGTCTGCGTGCTGAATTGCACGAGCAAGGGATAGA
AGTAGCAACGATATTCCCAGGATTTATTCAAACCAATATCTCTATTAATGCCTTGACTGGCGACGGTAGTGCACAAGGGA
CGATGGATGCGGCAACCAATAAAGGACTAACTGCGACTAGCTTTGCCAAACAAGTCGTCAAAGCCCTTACTAAAGGGGAA
GAGTATATTATCGTTGCTGGTCGCAAAGAAAAGCTCGCCACCAAGGTTAATCGCCTATCACCGCCAAAACTTTATAAGCT
CATTCGTGAGTCGCAAGTCAAATAA

Upstream 100 bases:

>100_bases
TTTGGTGGTTAATTGGGGTAGTTAAGCTTAATCGTTAAGCAACCACAATTAATAGAATAATATATGCTAAATTAAGAGTC
TCAATTGAGGCTCTTTTTTT

Downstream 100 bases:

>100_bases
ATCTAGCATGTTAAATAACTATAATTAGTGACATGTGATATCGCTACATCACGTACGGCTGGTATTAATTTTTCTTGCTT
GCTATGCCTACATAGACCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MGETERIPMKTNYKDLTIWITGASSGIGEALTIAFAKRGARIILSGRDEENLALVKSRCKNSKKHIVIPFDITDVEQAKL
AYATAKTQAGKIDWLINNAGISQRALIMDTTEDVERQIMDIDYFAQTRLSRLVLPDMLEQGGGKIVMISSVAGLLGTQYR
GAYGAAKAAIHMWANSLRAELHEQGIEVATIFPGFIQTNISINALTGDGSAQGTMDAATNKGLTATSFAKQVVKALTKGE
EYIIVAGRKEKLATKVNRLSPPKLYKLIRESQVK

Sequences:

>Translated_274_residues
MGETERIPMKTNYKDLTIWITGASSGIGEALTIAFAKRGARIILSGRDEENLALVKSRCKNSKKHIVIPFDITDVEQAKL
AYATAKTQAGKIDWLINNAGISQRALIMDTTEDVERQIMDIDYFAQTRLSRLVLPDMLEQGGGKIVMISSVAGLLGTQYR
GAYGAAKAAIHMWANSLRAELHEQGIEVATIFPGFIQTNISINALTGDGSAQGTMDAATNKGLTATSFAKQVVKALTKGE
EYIIVAGRKEKLATKVNRLSPPKLYKLIRESQVK
>Mature_273_residues
GETERIPMKTNYKDLTIWITGASSGIGEALTIAFAKRGARIILSGRDEENLALVKSRCKNSKKHIVIPFDITDVEQAKLA
YATAKTQAGKIDWLINNAGISQRALIMDTTEDVERQIMDIDYFAQTRLSRLVLPDMLEQGGGKIVMISSVAGLLGTQYRG
AYGAAKAAIHMWANSLRAELHEQGIEVATIFPGFIQTNISINALTGDGSAQGTMDAATNKGLTATSFAKQVVKALTKGEE
YIIVAGRKEKLATKVNRLSPPKLYKLIRESQVK

Specific function: May be involved in repressing heterocyst differentiation and may be essential for preventing all vegetative cells from differentiating [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=266, Percent_Identity=36.8421052631579, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=40, Blast_Score=150, Evalue=1e-36,
Organism=Homo sapiens, GI157739938, Length=277, Percent_Identity=25.2707581227437, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=31.4432989690722, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI32483357, Length=202, Percent_Identity=28.2178217821782, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=28.6458333333333, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI40807363, Length=201, Percent_Identity=29.8507462686567, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=30.8900523560209, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=30.8900523560209, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=30.8900523560209, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=30.8900523560209, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4504503, Length=188, Percent_Identity=30.3191489361702, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI40254992, Length=189, Percent_Identity=25.9259259259259, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=25.5102040816327, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI32455239, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI5031765, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI38348362, Length=174, Percent_Identity=28.1609195402299, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=28.4210526315789, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI223718074, Length=210, Percent_Identity=25.7142857142857, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI38424085, Length=174, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=25.3807106598985, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI226371731, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=204, Percent_Identity=25, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI5031737, Length=184, Percent_Identity=26.0869565217391, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI150247226, Length=200, Percent_Identity=29, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI119392083, Length=204, Percent_Identity=25.4901960784314, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI209862901, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI19923983, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4504505, Length=186, Percent_Identity=30.6451612903226, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723191, Length=190, Percent_Identity=27.3684210526316, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI4758504, Length=202, Percent_Identity=29.7029702970297, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=33.8709677419355, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1787335, Length=197, Percent_Identity=30.4568527918782, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=30.8510638297872, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=30.6451612903226, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790717, Length=186, Percent_Identity=29.5698924731183, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082160, Length=197, Percent_Identity=28.4263959390863, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789378, Length=197, Percent_Identity=29.4416243654822, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788459, Length=185, Percent_Identity=28.6486486486486, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=204, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=232, Percent_Identity=34.9137931034483, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17570069, Length=232, Percent_Identity=34.051724137931, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=32.8042328042328, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=31.5384615384615, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=245, Percent_Identity=30.2040816326531, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=197, Percent_Identity=31.4720812182741, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=186, Percent_Identity=30.1075268817204, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=29.3532338308458, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=196, Percent_Identity=30.6122448979592, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=192, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=185, Percent_Identity=27.5675675675676, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=200, Percent_Identity=27, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=240, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=190, Percent_Identity=27.8947368421053, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=26.7676767676768, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=220, Percent_Identity=31.8181818181818, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=251, Percent_Identity=28.2868525896414, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=194, Percent_Identity=30.4123711340206, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=29.8969072164948, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=193, Percent_Identity=31.6062176165803, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212646214, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=215, Percent_Identity=30.2325581395349, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560176, Length=241, Percent_Identity=26.9709543568465, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25147288, Length=181, Percent_Identity=24.8618784530387, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=197, Percent_Identity=26.9035532994924, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=183, Percent_Identity=25.6830601092896, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=194, Percent_Identity=30.4123711340206, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17532725, Length=198, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=203, Percent_Identity=30.0492610837438, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=199, Percent_Identity=27.6381909547739, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=262, Percent_Identity=30.1526717557252, Blast_Score=83, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322067, Length=231, Percent_Identity=29.004329004329, Blast_Score=80, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6322226, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6319635, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21358495, Length=263, Percent_Identity=34.9809885931559, Blast_Score=171, Evalue=6e-43,
Organism=Drosophila melanogaster, GI24580925, Length=218, Percent_Identity=35.3211009174312, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24644339, Length=213, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI23397609, Length=205, Percent_Identity=33.6585365853659, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571526, Length=199, Percent_Identity=31.1557788944724, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=28.7958115183246, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24640492, Length=279, Percent_Identity=25.4480286738351, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21356301, Length=180, Percent_Identity=30, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI281364892, Length=208, Percent_Identity=28.8461538461538, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI161076933, Length=225, Percent_Identity=27.1111111111111, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24584748, Length=225, Percent_Identity=27.1111111111111, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21355319, Length=185, Percent_Identity=27.5675675675676, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24649181, Length=243, Percent_Identity=26.7489711934156, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24651139, Length=199, Percent_Identity=29.6482412060301, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24581726, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17737361, Length=197, Percent_Identity=29.4416243654822, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574402, Length=226, Percent_Identity=26.5486725663717, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584744, Length=226, Percent_Identity=26.5486725663717, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24644337, Length=168, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357673, Length=210, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29844; Mature: 29713

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGETERIPMKTNYKDLTIWITGASSGIGEALTIAFAKRGARIILSGRDEENLALVKSRCK
CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHEEHHCCCEEEEECCCCCHHHHHHHHHC
NSKKHIVIPFDITDVEQAKLAYATAKTQAGKIDWLINNAGISQRALIMDTTEDVERQIMD
CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHH
IDYFAQTRLSRLVLPDMLEQGGGKIVMISSVAGLLGTQYRGAYGAAKAAIHMWANSLRAE
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LHEQGIEVATIFPGFIQTNISINALTGDGSAQGTMDAATNKGLTATSFAKQVVKALTKGE
HHHCCCEEEEECCCEEEECEEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCC
EYIIVAGRKEKLATKVNRLSPPKLYKLIRESQVK
EEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GETERIPMKTNYKDLTIWITGASSGIGEALTIAFAKRGARIILSGRDEENLALVKSRCK
CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHEEHHCCCEEEEECCCCCHHHHHHHHHC
NSKKHIVIPFDITDVEQAKLAYATAKTQAGKIDWLINNAGISQRALIMDTTEDVERQIMD
CCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHHH
IDYFAQTRLSRLVLPDMLEQGGGKIVMISSVAGLLGTQYRGAYGAAKAAIHMWANSLRAE
HHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LHEQGIEVATIFPGFIQTNISINALTGDGSAQGTMDAATNKGLTATSFAKQVVKALTKGE
HHHCCCEEEEECCCEEEECEEEEEEECCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCC
EYIIVAGRKEKLATKVNRLSPPKLYKLIRESQVK
EEEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157596; 11759840 [H]