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The map label for this gene is nusB

Identifier: 93007217

GI number: 93007217

Start: 2941867

End: 2942814

Strand: Direct

Name: nusB

Synonym: Pcryo_2393

Alternate gene names: 93007217

Gene position: 2941867-2942814 (Clockwise)

Preceding gene: 93007216

Following gene: 93007218

Centisome position: 96.14

GC content: 41.14

Gene sequence:

>948_bases
ATGAGTGAGTCTTCTTATAAGACCAGTCACACTGCTATTCGTAAGGCACGCCGCTTTGCTATGCAAGGTCTATATGAATG
GCTGGTTACTGACCGCCGTTTTGATATCGATGGCAAGCTTGGTTGGAAAGCCAATGCCCCGCACGATATTGCTGCTCGTA
CACGCGCGACTAATGCCATGCATACTGTACATATTGGCTACTATCATGAAATGATGCGTGATATCCCAGAGCAGATTGAT
GCCTTAGATGCGCTTATTAGCCAGCATCTAGATCGTGAAATCAATAAACTCGATACGGTTGAACATGCCATTCTTTTGGT
TGGCGCTTACGAGCTACAAAATCGTTTAGAAATTCCGTACAAAGTGGTACTTGATGAAGCGATGAAGCTAAACAATCACT
TTGGTGCTACGGATGCACATAAACTGATTAATGCCGTCTTAGATAGAATGGCAGTTGAGCTACGTGCTCCCGAAGTAGAC
GCAGATAGTAAAGCCAATCTTCGCACCTCACAAAAAGCAGCAGCTAAGCCTGTTACTAAAGCGGATAAAAAAACAGATAT
CAATGCTAATAATAGCGATATCGAAGAAAAACCAATAGCATCAAATAAACCACGTATCAGTGCTAATAATGCCAGTGTTA
AACGCAATAGTGTCAGTAAAGCTTTGGCAAATATTACTGATTACAAAGCTAGTAAGCAGAACGATACTCAAAATACGGTT
GAGGAAATTATTATTAAGCCGACTAGCATCGAAACAGTCATCGTTGATAAAGTAGACGAGATTGCCGTTAGTGCCGAAAA
CATTGCCAATGATCAGCCAGTAGAAGAAAACATCGCTGCTAGCAATGACAAAGTTACAGCAGAGGTCGAATTACTTGACT
CGAATAGCGCTAATTTTGATACAAAAAGTGCTGAATTAAATGATGCTGATGAAAAAAGCCAAGACTAG

Upstream 100 bases:

>100_bases
CAAGCGCGCTATTAGCGCTGCACAAACCGCACAAGTTAATGACCAACAAGCTGAAGCCACGCGCATCGCGAGCAGCAGTG
CGGGCGATCAAACCTTTGAT

Downstream 100 bases:

>100_bases
CCATGAATGAATTTGAGCTGATTGAGCGCATATTTTCACAGATGCAAGCCACGCAGTCATCATCTAACGCTGTCGAAAAG
GGCATCGGTGATGATGCGGC

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSESSYKTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMRDIPEQID
ALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKLNNHFGATDAHKLINAVLDRMAVELRAPEVD
ADSKANLRTSQKAAAKPVTKADKKTDINANNSDIEEKPIASNKPRISANNASVKRNSVSKALANITDYKASKQNDTQNTV
EEIIIKPTSIETVIVDKVDEIAVSAENIANDQPVEENIAASNDKVTAEVELLDSNSANFDTKSAELNDADEKSQD

Sequences:

>Translated_315_residues
MSESSYKTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMRDIPEQID
ALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKLNNHFGATDAHKLINAVLDRMAVELRAPEVD
ADSKANLRTSQKAAAKPVTKADKKTDINANNSDIEEKPIASNKPRISANNASVKRNSVSKALANITDYKASKQNDTQNTV
EEIIIKPTSIETVIVDKVDEIAVSAENIANDQPVEENIAASNDKVTAEVELLDSNSANFDTKSAELNDADEKSQD
>Mature_314_residues
SESSYKTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMRDIPEQIDA
LDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKLNNHFGATDAHKLINAVLDRMAVELRAPEVDA
DSKANLRTSQKAAAKPVTKADKKTDINANNSDIEEKPIASNKPRISANNASVKRNSVSKALANITDYKASKQNDTQNTVE
EIIIKPTSIETVIVDKVDEIAVSAENIANDQPVEENIAASNDKVTAEVELLDSNSANFDTKSAELNDADEKSQD

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=136, Percent_Identity=32.3529411764706, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_PSYCK (Q1Q833)

Other databases:

- EMBL:   CP000323
- RefSeq:   YP_581654.1
- ProteinModelPortal:   Q1Q833
- SMR:   Q1Q833
- STRING:   Q1Q833
- GeneID:   4035002
- GenomeReviews:   CP000323_GR
- KEGG:   pcr:Pcryo_2393
- NMPDR:   fig|335284.3.peg.1828
- eggNOG:   COG0781
- HOGENOM:   HBG190332
- OMA:   PRISANN
- PhylomeDB:   Q1Q833
- ProtClustDB:   CLSK839591
- BioCyc:   PCRY335284:PCRYO_2393-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 35002; Mature: 34871

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESSYKTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
HTVHIGYYHEMMRDIPEQIDALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPY
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KVVLDEAMKLNNHFGATDAHKLINAVLDRMAVELRAPEVDADSKANLRTSQKAAAKPVTK
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
ADKKTDINANNSDIEEKPIASNKPRISANNASVKRNSVSKALANITDYKASKQNDTQNTV
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
EEIIIKPTSIETVIVDKVDEIAVSAENIANDQPVEENIAASNDKVTAEVELLDSNSANFD
HHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCCC
TKSAELNDADEKSQD
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
SESSYKTSHTAIRKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
HTVHIGYYHEMMRDIPEQIDALDALISQHLDREINKLDTVEHAILLVGAYELQNRLEIPY
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
KVVLDEAMKLNNHFGATDAHKLINAVLDRMAVELRAPEVDADSKANLRTSQKAAAKPVTK
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
ADKKTDINANNSDIEEKPIASNKPRISANNASVKRNSVSKALANITDYKASKQNDTQNTV
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
EEIIIKPTSIETVIVDKVDEIAVSAENIANDQPVEENIAASNDKVTAEVELLDSNSANFD
HHHHCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEEEEEECCCCCCC
TKSAELNDADEKSQD
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA