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The map label for this gene is rbgA [H]

Identifier: 93007107

GI number: 93007107

Start: 2805081

End: 2806037

Strand: Direct

Name: rbgA [H]

Synonym: Pcryo_2283

Alternate gene names: 93007107

Gene position: 2805081-2806037 (Clockwise)

Preceding gene: 93007106

Following gene: 93007108

Centisome position: 91.67

GC content: 45.98

Gene sequence:

>957_bases
ATGGATAAGAGAGTAAGTATTCAGTGGTTCCCTGGGCATATGAACAAAGCCCGCAATGAAATCAAAGAAATTATGCCGCA
GATGGATGTGGTTATCGAAGTGATTGATGCGCGTATTCCTTATAGCAGCGAAAACCCGATGGTCGCTGCATTACGCGGTG
AAAAACCGGTCATCAAAATCTTAAATAAAGCTGATCTTGCTGATCCTGAGCTGACCCAAGCGTGGATGGACTATCTTGAG
CAGCAAAATGGTGTTAAAGCCATTGCTTGTGATACCGATAAAGCCAATGATGTCAAACGTATCATTGCTATCTGTAAACA
ACTCGTCCCTAATAAAGTCGGTACCGGTCGCCAAATCAAAGCCATGATTATGGGTATTCCAAACGTCGGTAAATCGACTT
TGATCAACACTTTGGCTGGGCGCGCCGTGGCTAGAACAGGTGATGAGCCGGCAGTTACCAAGTCTCAGCAATTGATTAAA
CTTGATGACGATATTATGCTTTATGACACGCCCGGTATGCTGTGGCCAAAAGTCGAAAACGAAAACTCTGGCTATCGCTT
GGCTGCAACAGGCGGCATTCGTGATACGGCGTTTGATTTTGCGGATGTTGCTGGTTATACCGCTGAGTATTTATTAACCG
CCTATCCTGAGCTGCTAAAAACCCGCTATAAAATTGAAGAACTGCCTAAGACCGATTGGGAGTTTTTTGAAATAGCGGGT
CGCAATCGCGGCTGCGTGCGCGCGGGTAATAAAGTCGATACCTACCGGATGTCTGAAATCCTAGTTAATGAGCTGCGTAG
TGGTAAGATTGGGCGTATCACTTTGGAGACGCCTGCTATGACTGAGGCTGAAGAAGTCGTCGTCGCTGAACAACGCATTG
CAGCAGAAGAAAAAAGAATCGCTAAAGAAGAAGAGAAACGCTTACGTCGCCTTAAAACGCGGAAGAATCGGAAGTAG

Upstream 100 bases:

>100_bases
TTAGCATCCGTACGTGGCTTATGTAGTAAACTGAACACCATGAAAAGTAAATGACGATCGTCTTACTTTGAGCATTTTTT
ATAAAAGGTTATGAAAGCAG

Downstream 100 bases:

>100_bases
ACACTAATTAACATAGCTCGTAGGGTGCGCCTAGCGCACCTGTTTTATCTTTATAATTCACCTTTAACTTATCTGAAAAT
CCTCACAATCTCACTTGGCA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MDKRVSIQWFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPVIKILNKADLADPELTQAWMDYLE
QQNGVKAIACDTDKANDVKRIIAICKQLVPNKVGTGRQIKAMIMGIPNVGKSTLINTLAGRAVARTGDEPAVTKSQQLIK
LDDDIMLYDTPGMLWPKVENENSGYRLAATGGIRDTAFDFADVAGYTAEYLLTAYPELLKTRYKIEELPKTDWEFFEIAG
RNRGCVRAGNKVDTYRMSEILVNELRSGKIGRITLETPAMTEAEEVVVAEQRIAAEEKRIAKEEEKRLRRLKTRKNRK

Sequences:

>Translated_318_residues
MDKRVSIQWFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPVIKILNKADLADPELTQAWMDYLE
QQNGVKAIACDTDKANDVKRIIAICKQLVPNKVGTGRQIKAMIMGIPNVGKSTLINTLAGRAVARTGDEPAVTKSQQLIK
LDDDIMLYDTPGMLWPKVENENSGYRLAATGGIRDTAFDFADVAGYTAEYLLTAYPELLKTRYKIEELPKTDWEFFEIAG
RNRGCVRAGNKVDTYRMSEILVNELRSGKIGRITLETPAMTEAEEVVVAEQRIAAEEKRIAKEEEKRLRRLKTRKNRK
>Mature_318_residues
MDKRVSIQWFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPVIKILNKADLADPELTQAWMDYLE
QQNGVKAIACDTDKANDVKRIIAICKQLVPNKVGTGRQIKAMIMGIPNVGKSTLINTLAGRAVARTGDEPAVTKSQQLIK
LDDDIMLYDTPGMLWPKVENENSGYRLAATGGIRDTAFDFADVAGYTAEYLLTAYPELLKTRYKIEELPKTDWEFFEIAG
RNRGCVRAGNKVDTYRMSEILVNELRSGKIGRITLETPAMTEAEEVVVAEQRIAAEEKRIAKEEEKRLRRLKTRKNRK

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=212, Percent_Identity=35.8490566037736, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI7019419, Length=264, Percent_Identity=27.6515151515151, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI45593130, Length=261, Percent_Identity=26.0536398467433, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI45643129, Length=261, Percent_Identity=26.0536398467433, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI45643127, Length=261, Percent_Identity=26.0536398467433, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI296317324, Length=185, Percent_Identity=29.1891891891892, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI9506611, Length=185, Percent_Identity=29.1891891891892, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17534827, Length=292, Percent_Identity=27.0547945205479, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI193211047, Length=222, Percent_Identity=31.0810810810811, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32563985, Length=264, Percent_Identity=28.4090909090909, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71990926, Length=264, Percent_Identity=28.4090909090909, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32563983, Length=264, Percent_Identity=28.4090909090909, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25143545, Length=328, Percent_Identity=22.8658536585366, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115535155, Length=185, Percent_Identity=25.9459459459459, Blast_Score=68, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982363, Length=185, Percent_Identity=25.9459459459459, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324381, Length=277, Percent_Identity=28.5198555956679, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6320842, Length=290, Percent_Identity=26.2068965517241, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6323744, Length=236, Percent_Identity=31.3559322033898, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI85815858, Length=309, Percent_Identity=29.126213592233, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI28572990, Length=305, Percent_Identity=29.1803278688525, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI19922460, Length=296, Percent_Identity=26.6891891891892, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35884; Mature: 35884

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRVSIQWFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPVIKI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHH
LNKADLADPELTQAWMDYLEQQNGVKAIACDTDKANDVKRIIAICKQLVPNKVGTGRQIK
HHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
AMIMGIPNVGKSTLINTLAGRAVARTGDEPAVTKSQQLIKLDDDIMLYDTPGMLWPKVEN
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCC
ENSGYRLAATGGIRDTAFDFADVAGYTAEYLLTAYPELLKTRYKIEELPKTDWEFFEIAG
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
RNRGCVRAGNKVDTYRMSEILVNELRSGKIGRITLETPAMTEAEEVVVAEQRIAAEEKRI
CCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
AKEEEKRLRRLKTRKNRK
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDKRVSIQWFPGHMNKARNEIKEIMPQMDVVIEVIDARIPYSSENPMVAALRGEKPVIKI
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHH
LNKADLADPELTQAWMDYLEQQNGVKAIACDTDKANDVKRIIAICKQLVPNKVGTGRQIK
HHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
AMIMGIPNVGKSTLINTLAGRAVARTGDEPAVTKSQQLIKLDDDIMLYDTPGMLWPKVEN
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCCC
ENSGYRLAATGGIRDTAFDFADVAGYTAEYLLTAYPELLKTRYKIEELPKTDWEFFEIAG
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCC
RNRGCVRAGNKVDTYRMSEILVNELRSGKIGRITLETPAMTEAEEVVVAEQRIAAEEKRI
CCCCCEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
AKEEEKRLRRLKTRKNRK
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]