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The map label for this gene is siaP [H]

Identifier: 93007085

GI number: 93007085

Start: 2772617

End: 2773675

Strand: Reverse

Name: siaP [H]

Synonym: Pcryo_2261

Alternate gene names: 93007085

Gene position: 2773675-2772617 (Counterclockwise)

Preceding gene: 93007086

Following gene: 93007084

Centisome position: 90.65

GC content: 41.74

Gene sequence:

>1059_bases
ATGAAGTTAGCTCCTCTTTTTTCAATAGGTGCATTAGCAGCTATTAGCCTTCTAGGTTGTTCTAATCAAGCTTCTGATAG
TACTGATGCTTCTGCAGCAACTTCTCAAGAAACAACCACATTGCGCTTTTCTCATTTTTGGCCAGCAACCTCCTCTATTA
GTACAGAGGTCTTTGAACCTTGGGCTAAGCAAATAGAAGCAGATTCTAATGGTCGTTTAAAAGTAGAGTTATATCCTTCA
GCTGGTCTTGCTAAAGCAGACGTTACTTATGAATCTGCTGCCAAAGGCACGATAGATATTGGCTCACAAGCACACGGCTA
TACCAATGGTCGCTTTCCTTTAACTCAGATTACTGAGCTTCCTGGTTTATCAAACTCAGCGACTCAGATGGGTTGTATGC
TCCAAACTCTATATGAAGATGGTACTTTAGCTGGTGAATATGAAGATACGCATATGTTGTTTATGTATGGTGCTGGACCG
GGTGCGTTGCATACAACGAACAAATTAATTCGTACACCTGAAGATATGAAAGGTATGCGTATTCGTCGTCCTTCTGCGGT
TGCTGGCGACATCATCGAAAGTGCGGGAGCCTCACCAGTAGGCTTGCCTGCCAATGACATGTATACGTCTTTGCAACGCG
GCGTCGTTGATGGTTTGAGTTTTCCATGGGAAGCTGTGACCGCCTTTAAAATTGACGAAATTACCAAATACCATACCAAT
ATTCCTTTTTATAGTTCAGCGCTTATGGTGACTATGAATAAAGATAAATATGAGAGTTTACCGGATGATTTGAAAAAGGT
ACTGGATAAAAATTCAGGTATGGCGCTTGCCAATAAGGTTGGTGAAGTATTTGATAAACATGATGATATGGCAATAGAAG
CAGCTAGGAAAAAAGGTGATGAAATCGTTGAAATCCCTGATCCATTAAATGATCCTAACTGGAAAGGACCGCTTGAGAAA
GGCACCAATAAATATCTTGCTGATGTTAAAGCGCTAGGTCTAGATGCAGAGGGCGTTTATGCTAAAGCAAAAGCCGCCAG
TGCAGCCTGTAAGGTCTAA

Upstream 100 bases:

>100_bases
TAATTAAAAGTATTTATAGAGTCTATACGGAAATTGACCTTATAATTAACTTATTAGTAAAGACTCATACCCTATCCATG
GTTATCAAAAGGAATTGATA

Downstream 100 bases:

>100_bases
CCTAAAGGAGTTTCGCATGGTATTTTTAGTTAAACTGAGCATCCTCATTTCAAGGTTATGTCAATTCATTGGTGGTATCA
GTCTCATTATCATTGTACTG

Product: TRAP dicarboxylate transporter subunit DctP

Products: NA

Alternate protein names: Extracytoplasmic solute receptor protein siaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein [H]

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKLAPLFSIGALAAISLLGCSNQASDSTDASAATSQETTTLRFSHFWPATSSISTEVFEPWAKQIEADSNGRLKVELYPS
AGLAKADVTYESAAKGTIDIGSQAHGYTNGRFPLTQITELPGLSNSATQMGCMLQTLYEDGTLAGEYEDTHMLFMYGAGP
GALHTTNKLIRTPEDMKGMRIRRPSAVAGDIIESAGASPVGLPANDMYTSLQRGVVDGLSFPWEAVTAFKIDEITKYHTN
IPFYSSALMVTMNKDKYESLPDDLKKVLDKNSGMALANKVGEVFDKHDDMAIEAARKKGDEIVEIPDPLNDPNWKGPLEK
GTNKYLADVKALGLDAEGVYAKAKAASAACKV

Sequences:

>Translated_352_residues
MKLAPLFSIGALAAISLLGCSNQASDSTDASAATSQETTTLRFSHFWPATSSISTEVFEPWAKQIEADSNGRLKVELYPS
AGLAKADVTYESAAKGTIDIGSQAHGYTNGRFPLTQITELPGLSNSATQMGCMLQTLYEDGTLAGEYEDTHMLFMYGAGP
GALHTTNKLIRTPEDMKGMRIRRPSAVAGDIIESAGASPVGLPANDMYTSLQRGVVDGLSFPWEAVTAFKIDEITKYHTN
IPFYSSALMVTMNKDKYESLPDDLKKVLDKNSGMALANKVGEVFDKHDDMAIEAARKKGDEIVEIPDPLNDPNWKGPLEK
GTNKYLADVKALGLDAEGVYAKAKAASAACKV
>Mature_352_residues
MKLAPLFSIGALAAISLLGCSNQASDSTDASAATSQETTTLRFSHFWPATSSISTEVFEPWAKQIEADSNGRLKVELYPS
AGLAKADVTYESAAKGTIDIGSQAHGYTNGRFPLTQITELPGLSNSATQMGCMLQTLYEDGTLAGEYEDTHMLFMYGAGP
GALHTTNKLIRTPEDMKGMRIRRPSAVAGDIIESAGASPVGLPANDMYTSLQRGVVDGLSFPWEAVTAFKIDEITKYHTN
IPFYSSALMVTMNKDKYESLPDDLKKVLDKNSGMALANKVGEVFDKHDDMAIEAARKKGDEIVEIPDPLNDPNWKGPLEK
GTNKYLADVKALGLDAEGVYAKAKAASAACKV

Specific function: Part of the tripartite ATP-independent periplasmic (TRAP) transport system siaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid [H]

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

Organism=Escherichia coli, GI1790004, Length=254, Percent_Identity=25.1968503937008, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 37790; Mature: 37790

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAPLFSIGALAAISLLGCSNQASDSTDASAATSQETTTLRFSHFWPATSSISTEVFEP
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHH
WAKQIEADSNGRLKVELYPSAGLAKADVTYESAAKGTIDIGSQAHGYTNGRFPLTQITEL
HHHHHCCCCCCEEEEEECCCCCCEECCCCHHHCCCCEEECCCCCCCCCCCCCCHHHHHHC
PGLSNSATQMGCMLQTLYEDGTLAGEYEDTHMLFMYGAGPGALHTTNKLIRTPEDMKGMR
CCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEEEEEECCCCCCHHCHHHHCCCCHHCCCE
IRRPSAVAGDIIESAGASPVGLPANDMYTSLQRGVVDGLSFPWEAVTAFKIDEITKYHTN
EECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHHHHHHCC
IPFYSSALMVTMNKDKYESLPDDLKKVLDKNSGMALANKVGEVFDKHDDMAIEAARKKGD
CCEECCEEEEEECCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC
EIVEIPDPLNDPNWKGPLEKGTNKYLADVKALGLDAEGVYAKAKAASAACKV
CEEECCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKLAPLFSIGALAAISLLGCSNQASDSTDASAATSQETTTLRFSHFWPATSSISTEVFEP
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHH
WAKQIEADSNGRLKVELYPSAGLAKADVTYESAAKGTIDIGSQAHGYTNGRFPLTQITEL
HHHHHCCCCCCEEEEEECCCCCCEECCCCHHHCCCCEEECCCCCCCCCCCCCCHHHHHHC
PGLSNSATQMGCMLQTLYEDGTLAGEYEDTHMLFMYGAGPGALHTTNKLIRTPEDMKGMR
CCCCCCHHHHHHHHHHHHCCCCEECCCCCCEEEEEEECCCCCCHHCHHHHCCCCHHCCCE
IRRPSAVAGDIIESAGASPVGLPANDMYTSLQRGVVDGLSFPWEAVTAFKIDEITKYHTN
EECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEHHHHHHHHCC
IPFYSSALMVTMNKDKYESLPDDLKKVLDKNSGMALANKVGEVFDKHDDMAIEAARKKGD
CCEECCEEEEEECCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCC
EIVEIPDPLNDPNWKGPLEKGTNKYLADVKALGLDAEGVYAKAKAASAACKV
CEEECCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA