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The map label for this gene is yiaD [H]

Identifier: 93006911

GI number: 93006911

Start: 2555178

End: 2555831

Strand: Reverse

Name: yiaD [H]

Synonym: Pcryo_2087

Alternate gene names: 93006911

Gene position: 2555831-2555178 (Counterclockwise)

Preceding gene: 93006917

Following gene: 93006910

Centisome position: 83.53

GC content: 46.02

Gene sequence:

>654_bases
ATGCGTAATACATTAATGGTTGCAGCAATCGCTTCAGGTTTGGCTCTTACCGGTTGTGTCACTGATCCTAACACTGGACA
ACAACGTCTTAACAAGTCTGCTATCGGCGCTCTAGCTGGTGCTGCAGGTGGTGCGACTATCTCAAAAGCTACTGGTGGTG
ATAAAACTGGTCGTGATGCTGCTATTGGTGCTGCATTAGGTGCTGGCGTTGGTTACTATATGGAGCGTCAAGCTCGTCAG
CTTGAGCAACAAATGGCTGGTACTGGCGTAACGGTTAAGCCAAACGCTAACGGCAACATTGATCTGGTTATGCCGGGTAG
CATCACTTTCTCGTTTGATGATGCGACTTTGAACAACTCATTTAAGCCAACGCTTGATAAACTTGCTGCGACAATGAATG
AGTATAACCAAAACACCATTACTATTGCTGGTCATACAGACAGTAAAGGTACTGATGCTTATAACATGAAGTTATCACGT
GACCGTGCTTATGCAGTAGCGAACTACTTAAGTGCGCGTGGCGTAGCATCTAACCGTATCAATGTTGTTGCTTATGGCGA
GTCACGTCCTGTTGCTGATAACAATAGCGAATTTGGTCGTCAACAGAACCGCCGTGTTGAGCTGACAGTTAACGCACCAC
AAAGCGTTCGTTAA

Upstream 100 bases:

>100_bases
TTAGTGTCGATAAACACCCAAACAATATAGTTAATGGCTAATTTGTCGTTAGCGTCTTTTATAAAAGTACGATTATTTTT
TCAACTTAAGAGGACATATT

Downstream 100 bases:

>100_bases
TTTTAAATGATTAGCTAATATTTAATATCGAAAAAAGGTCAGCATAAAGCTGGCCTTTTTTTTGGCTTGAATTTTGTCTC
TCATTAAGAAATTATATTTG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MRNTLMVAAIASGLALTGCVTDPNTGQQRLNKSAIGALAGAAGGATISKATGGDKTGRDAAIGAALGAGVGYYMERQARQ
LEQQMAGTGVTVKPNANGNIDLVMPGSITFSFDDATLNNSFKPTLDKLAATMNEYNQNTITIAGHTDSKGTDAYNMKLSR
DRAYAVANYLSARGVASNRINVVAYGESRPVADNNSEFGRQQNRRVELTVNAPQSVR

Sequences:

>Translated_217_residues
MRNTLMVAAIASGLALTGCVTDPNTGQQRLNKSAIGALAGAAGGATISKATGGDKTGRDAAIGAALGAGVGYYMERQARQ
LEQQMAGTGVTVKPNANGNIDLVMPGSITFSFDDATLNNSFKPTLDKLAATMNEYNQNTITIAGHTDSKGTDAYNMKLSR
DRAYAVANYLSARGVASNRINVVAYGESRPVADNNSEFGRQQNRRVELTVNAPQSVR
>Mature_217_residues
MRNTLMVAAIASGLALTGCVTDPNTGQQRLNKSAIGALAGAAGGATISKATGGDKTGRDAAIGAALGAGVGYYMERQARQ
LEQQMAGTGVTVKPNANGNIDLVMPGSITFSFDDATLNNSFKPTLDKLAATMNEYNQNTITIAGHTDSKGTDAYNMKLSR
DRAYAVANYLSARGVASNRINVVAYGESRPVADNNSEFGRQQNRRVELTVNAPQSVR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=216, Percent_Identity=41.2037037037037, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=32.3529411764706, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787191, Length=126, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22722; Mature: 22722

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTLMVAAIASGLALTGCVTDPNTGQQRLNKSAIGALAGAAGGATISKATGGDKTGRDA
CCCEEEEEEHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH
AIGAALGAGVGYYMERQARQLEQQMAGTGVTVKPNANGNIDLVMPGSITFSFDDATLNNS
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCEEEEEECCCCCCCC
FKPTLDKLAATMNEYNQNTITIAGHTDSKGTDAYNMKLSRDRAYAVANYLSARGVASNRI
CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCE
NVVAYGESRPVADNNSEFGRQQNRRVELTVNAPQSVR
EEEEECCCCCCCCCCHHHCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MRNTLMVAAIASGLALTGCVTDPNTGQQRLNKSAIGALAGAAGGATISKATGGDKTGRDA
CCCEEEEEEHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH
AIGAALGAGVGYYMERQARQLEQQMAGTGVTVKPNANGNIDLVMPGSITFSFDDATLNNS
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCEEEEEECCCCCCCC
FKPTLDKLAATMNEYNQNTITIAGHTDSKGTDAYNMKLSRDRAYAVANYLSARGVASNRI
CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCE
NVVAYGESRPVADNNSEFGRQQNRRVELTVNAPQSVR
EEEEECCCCCCCCCCHHHCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]