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The map label for this gene is 93006671

Identifier: 93006671

GI number: 93006671

Start: 2280202

End: 2281218

Strand: Reverse

Name: 93006671

Synonym: Pcryo_1847

Alternate gene names: NA

Gene position: 2281218-2280202 (Counterclockwise)

Preceding gene: 93006673

Following gene: 93006667

Centisome position: 74.55

GC content: 41.49

Gene sequence:

>1017_bases
ATGTCCCTCATGTCCAGCTTCAAAGGTGTCTTAGGCGAAACAGTCATTAATGTTGCCATGTGGTTAAAGCTAGAAAAAGA
CCTTTATCACCGTTTAAATAATATCACTTTACCATTAGCCAATGGTGGTAGTACCCAAATCGACCATGTCATTGTCTCTA
AATATGGCATCTTTGTCATCGAAACCAAAAACTATAAAGGCTGGATATTTGGTAATGAGGCGCAAAGACAGTGGACGCAA
GTCATTATGGGTCGCAAGTATAAGTTCCAAAACCCATTACGCCAGAATTATTTGCATATCAAAACGCTGGCGGATTTATT
AGCATTAGAGATGAGCTACTTTCATTCGATGATTGCGTTCATTGGAGAGTGTGAGCTAAAAACTCGCGATGAGTTGCCGG
AGCACGTATTGACGAGTGGGATGGTGTCTTATATTAAAAGAAAGCAGGATGAGATACTTACTGAAGACGAGGTCACATCC
ATCGTTGAGCAGATTAACAGCAATAGATTTAGTAAGTCGTGGCGCACTAATAGAGAGCACAAAGCTTATCTAAAGGATAA
GCATAGCAATCCAAGCAAGTCGTCTAGCAATAACTCTAATGGTAAGTCAGTTGCTACAACTACTGCTAAGTCTACATCTG
AGCCGATAGTAAAAGAAACCGCTAAACGAGCCAGGCTGAAAAGTAGAGCAGTGCATCGATGGTCTGGTCAAACTGAGATT
GAGTCTAGCGATTTACCAATTGATAGTTTGAGTACTCAGCAGATAAGTTCGCCGCATGATATTACTGATAAAGTTTTTCT
CACACCCTTTGAGGTTATAGAGACTGAGCCACAAGTGCATTACCCTGCGACACTTGTGGCGATAGACAATATAGCTAATT
TCATCCAAGCACCAACTTGCCCGAGATGTAATAGTGAGATGGTCAAACGCGTTGCAAAAAAAGGCGCCCATCTTGGGCAG
ACCTTTTTTGGTTGTAGCCAATTTCCAAAATGTCGCGGAGTAGTCAATACAAATTGA

Upstream 100 bases:

>100_bases
TATTAAAGTTATAAGCACTTGAGGCGTGTTAGGTAAATGGTTTAAGACAGCATACTATTTTAATTATAAGTGTTTTTATC
TTTTTTATTGGAAGACGATT

Downstream 100 bases:

>100_bases
GCCCAAATGAAACTTGATTTTGGGCTCGATTAATCATCTTAAACTATGTTAAGCAGGGACTGACTCAGCATGCACGTGAT
TGGCCTTGATAAGGTCTGCT

Product: DNA topoisomerase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSLMSSFKGVLGETVINVAMWLKLEKDLYHRLNNITLPLANGGSTQIDHVIVSKYGIFVIETKNYKGWIFGNEAQRQWTQ
VIMGRKYKFQNPLRQNYLHIKTLADLLALEMSYFHSMIAFIGECELKTRDELPEHVLTSGMVSYIKRKQDEILTEDEVTS
IVEQINSNRFSKSWRTNREHKAYLKDKHSNPSKSSSNNSNGKSVATTTAKSTSEPIVKETAKRARLKSRAVHRWSGQTEI
ESSDLPIDSLSTQQISSPHDITDKVFLTPFEVIETEPQVHYPATLVAIDNIANFIQAPTCPRCNSEMVKRVAKKGAHLGQ
TFFGCSQFPKCRGVVNTN

Sequences:

>Translated_338_residues
MSLMSSFKGVLGETVINVAMWLKLEKDLYHRLNNITLPLANGGSTQIDHVIVSKYGIFVIETKNYKGWIFGNEAQRQWTQ
VIMGRKYKFQNPLRQNYLHIKTLADLLALEMSYFHSMIAFIGECELKTRDELPEHVLTSGMVSYIKRKQDEILTEDEVTS
IVEQINSNRFSKSWRTNREHKAYLKDKHSNPSKSSSNNSNGKSVATTTAKSTSEPIVKETAKRARLKSRAVHRWSGQTEI
ESSDLPIDSLSTQQISSPHDITDKVFLTPFEVIETEPQVHYPATLVAIDNIANFIQAPTCPRCNSEMVKRVAKKGAHLGQ
TFFGCSQFPKCRGVVNTN
>Mature_337_residues
SLMSSFKGVLGETVINVAMWLKLEKDLYHRLNNITLPLANGGSTQIDHVIVSKYGIFVIETKNYKGWIFGNEAQRQWTQV
IMGRKYKFQNPLRQNYLHIKTLADLLALEMSYFHSMIAFIGECELKTRDELPEHVLTSGMVSYIKRKQDEILTEDEVTSI
VEQINSNRFSKSWRTNREHKAYLKDKHSNPSKSSSNNSNGKSVATTTAKSTSEPIVKETAKRARLKSRAVHRWSGQTEIE
SSDLPIDSLSTQQISSPHDITDKVFLTPFEVIETEPQVHYPATLVAIDNIANFIQAPTCPRCNSEMVKRVAKKGAHLGQT
FFGCSQFPKCRGVVNTN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 NERD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011528 [H]

Pfam domain/function: PF08378 NERD [H]

EC number: NA

Molecular weight: Translated: 38285; Mature: 38154

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50965 NERD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMSSFKGVLGETVINVAMWLKLEKDLYHRLNNITLPLANGGSTQIDHVIVSKYGIFVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHEECCCEEEE
ETKNYKGWIFGNEAQRQWTQVIMGRKYKFQNPLRQNYLHIKTLADLLALEMSYFHSMIAF
EECCCCEEEECCHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGECELKTRDELPEHVLTSGMVSYIKRKQDEILTEDEVTSIVEQINSNRFSKSWRTNREH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCHH
KAYLKDKHSNPSKSSSNNSNGKSVATTTAKSTSEPIVKETAKRARLKSRAVHRWSGQTEI
HHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
ESSDLPIDSLSTQQISSPHDITDKVFLTPFEVIETEPQVHYPATLVAIDNIANFIQAPTC
CCCCCCCCCCCHHHCCCCCCCCCCEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
PRCNSEMVKRVAKKGAHLGQTFFGCSQFPKCRGVVNTN
CCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SLMSSFKGVLGETVINVAMWLKLEKDLYHRLNNITLPLANGGSTQIDHVIVSKYGIFVI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHEECCCEEEE
ETKNYKGWIFGNEAQRQWTQVIMGRKYKFQNPLRQNYLHIKTLADLLALEMSYFHSMIAF
EECCCCEEEECCHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGECELKTRDELPEHVLTSGMVSYIKRKQDEILTEDEVTSIVEQINSNRFSKSWRTNREH
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHCCCHH
KAYLKDKHSNPSKSSSNNSNGKSVATTTAKSTSEPIVKETAKRARLKSRAVHRWSGQTEI
HHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
ESSDLPIDSLSTQQISSPHDITDKVFLTPFEVIETEPQVHYPATLVAIDNIANFIQAPTC
CCCCCCCCCCCHHHCCCCCCCCCCEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
PRCNSEMVKRVAKKGAHLGQTFFGCSQFPKCRGVVNTN
CCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10515943; 12004073 [H]