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The map label for this gene is 93006667

Identifier: 93006667

GI number: 93006667

Start: 2274112

End: 2276052

Strand: Reverse

Name: 93006667

Synonym: Pcryo_1843

Alternate gene names: NA

Gene position: 2276052-2274112 (Counterclockwise)

Preceding gene: 93006671

Following gene: 93006666

Centisome position: 74.38

GC content: 44.1

Gene sequence:

>1941_bases
ATGCGTCAATCTTCTGCTCTTGATATTTTAAAAACAGGTCAAAACGTCTTTTTGACGGGCTCAGCAGGTTCAGGTAAGAC
TTATACACTTAACCAATATATCGATTATCTACGCGCGCGTCGGGTACCGGTTGCTGTGACCGCGAGTACAGGCATTGCCG
CCACTCATATGAATGGCACGACCATTCATAGTTGGTCGGGCATTGGTATTAAGGATGAGCTAACGGATCGCGATTTAACC
AATTTATCACGTAAGCAGTTTTTGGCAGATAGATTAAAAGACACCGCGGTACTTATCATCGATGAGATATCGATGCTGCA
TGCCAAGCAGATTAATTTGGTCAGCCAAGTGCTTAAGCATGTACGCAAAAATGACAAAGCTTTCGGTGGTATCCAAGTCG
TTGTTGCAGGCGACTTTTTTCAGTTACCACCGATTGGTAGCAAGGGCGAGAGCAATCGTGAGAAGTTTGCCTTTATGAGT
GAGGCGTGGCTTGATGCTAAGTTTCACATCTGCTATCTGTCTGAGCAACATCGGCAGGTCAGCGACGCGGCAAATGGTGG
GCTTGATTTAGACGATATTCTCAATCAAATCCGTCGTCAAGAAGTCACCTTTGAGGCGATTGCCGCCTTAGAAGCTACTT
TTGATCAAAACGTCGATATCAAGCGTACGCGTCTTTATACGCACAATCTAAACGTTAATAAAATCAATGACAAAGAGTTG
GCTGATTTGTCTGGCGAGATGATGCGCTTTGAAGCCACATCTGTTGGCGATAGTAAACTGGTTGAGACGCTAAAGAAGAC
GGTTCGTACTCAAGATGACTTGGTATTAAAAGTTGGCTCAAAGGTGATGTTTATCAAAAACAATACCGAGCTTGGCGTGT
CTAACGGTACGATGGGTGAGCTGATTGGCTTTGCTGCTGTCAAAATTGATGATAGCAAAGAAAGTAGTGACGATTTAATC
GAAGACGATGATATTGGTAGCGATAAAGACAGTGATGTTGGTAACGATAAGCAGGCTGCCAAAAGCGCAAAAGAAAAAGC
CAAAAAAGATAAAGCAAAAGTTAAAAAGCCAACGACACAAAAAATGCCAGTGGTTAGGTTAAATACTGGGCGTGAGGTTA
TCGCTGAACCGGAAGAATGGATTATCGAGGACGAGACGGGCGATGTGCTCGCAAGCTATGAGCAAGTGCCATTATGTCTA
GCTTGGGCGATTACCATTCATAAGTCGCAAGGTATGACGCTTGAAGCTGCTGAGATTGACCTGTCACGTACCTTTGAGCT
TGGTCAAGGATATGTGGCGTTATCACGGTTAAAATCGCTGGCAGGTCTGCAGTTGCTCGGTATGAATGAAATGAGCTTGC
AGCTTGACCCACTGGCACGCGGTGCAGATAAGCGTTTTTTAGTGCTGTCTGATGAAGCGGATGCCAATTATGCAATGCTT
GATGAAGAAAGCATGACACAGGCACATGAGAAGTTTATTCTAAAGTCCGGCGGTACATTAAGCAAGTCAGTGATTGATGC
TTATGCCACTCTACAAACAAAGCGCCGTGAACAGCAGCAAGCGCAAATAGGAAAAAAACAGAAACTTGGCAATCAAGTGT
CTGATAAGTCAGACAGTACCTTACTTGCCACACGAATACTTCTTGAAGAAAGTTTATCTATCGCGGAAATATCGCAAGCA
CGGCAGCTGTCACAGTCTACCATTATGCGCCATATTGCTGAGCTGAAATCTCAAGACCCGAGCCTCGCTTGTGATCATCT
GCGGCCAGAAGATGAGGTTATGACGGCAGTGGGTAATGCCTATGTGGCGATTAAAGTTGCTAATAACCCAAATGATTTTA
ATGATGATGGTAGTATTAAGCTGCGTCCGATATTTGAGCATTTAAAACAAAGCGCTGATTACAATACCATTCGTTTGGCA
TTGATATTTATTACTCCGTAG

Upstream 100 bases:

>100_bases
ATGTAGCTGTTATAATTGAGGTTAAATACTTTTAGCTCGTCATGGTTATGAATTTAATCCTGTCAGCTTTCTTTCTTATA
CTCTTGGTTGGTTTGGATAT

Downstream 100 bases:

>100_bases
TCATTCTGAAGTCATAAGTGAATTTTTTAAAAGATGACTCTTTTATCTGCAACTGTTTTATTCGCGACTGCCTATATAGT
TAATTCACTTATAAAAGGGT

Product: ATPase

Products: NA

Alternate protein names: Helicase; TPR Domain Protein; TPR Domain-Containing Protein; ATPase; Exonuclease V Subunit Alpha; 5-3' DNA Helicase; Helicase-Related Protein; Aaa ATPase; Glycosysltransferase; Hrdc Domain Protein; Helicase-Family Protein; Helicase Protein; HRDC Domain Protein; RecD-Like Exodeoxyribonuclease V Alpha Chain; RRM3/PIF1 Helicase-Like Protein; ATP-Dependent ExoDNAse Alpha Subunit; DNA Helicase AAA ATPase; DNA Helicase/AAA ATPase; Helicase RecD/TraA Family

Number of amino acids: Translated: 646; Mature: 646

Protein sequence:

>646_residues
MRQSSALDILKTGQNVFLTGSAGSGKTYTLNQYIDYLRARRVPVAVTASTGIAATHMNGTTIHSWSGIGIKDELTDRDLT
NLSRKQFLADRLKDTAVLIIDEISMLHAKQINLVSQVLKHVRKNDKAFGGIQVVVAGDFFQLPPIGSKGESNREKFAFMS
EAWLDAKFHICYLSEQHRQVSDAANGGLDLDDILNQIRRQEVTFEAIAALEATFDQNVDIKRTRLYTHNLNVNKINDKEL
ADLSGEMMRFEATSVGDSKLVETLKKTVRTQDDLVLKVGSKVMFIKNNTELGVSNGTMGELIGFAAVKIDDSKESSDDLI
EDDDIGSDKDSDVGNDKQAAKSAKEKAKKDKAKVKKPTTQKMPVVRLNTGREVIAEPEEWIIEDETGDVLASYEQVPLCL
AWAITIHKSQGMTLEAAEIDLSRTFELGQGYVALSRLKSLAGLQLLGMNEMSLQLDPLARGADKRFLVLSDEADANYAML
DEESMTQAHEKFILKSGGTLSKSVIDAYATLQTKRREQQQAQIGKKQKLGNQVSDKSDSTLLATRILLEESLSIAEISQA
RQLSQSTIMRHIAELKSQDPSLACDHLRPEDEVMTAVGNAYVAIKVANNPNDFNDDGSIKLRPIFEHLKQSADYNTIRLA
LIFITP

Sequences:

>Translated_646_residues
MRQSSALDILKTGQNVFLTGSAGSGKTYTLNQYIDYLRARRVPVAVTASTGIAATHMNGTTIHSWSGIGIKDELTDRDLT
NLSRKQFLADRLKDTAVLIIDEISMLHAKQINLVSQVLKHVRKNDKAFGGIQVVVAGDFFQLPPIGSKGESNREKFAFMS
EAWLDAKFHICYLSEQHRQVSDAANGGLDLDDILNQIRRQEVTFEAIAALEATFDQNVDIKRTRLYTHNLNVNKINDKEL
ADLSGEMMRFEATSVGDSKLVETLKKTVRTQDDLVLKVGSKVMFIKNNTELGVSNGTMGELIGFAAVKIDDSKESSDDLI
EDDDIGSDKDSDVGNDKQAAKSAKEKAKKDKAKVKKPTTQKMPVVRLNTGREVIAEPEEWIIEDETGDVLASYEQVPLCL
AWAITIHKSQGMTLEAAEIDLSRTFELGQGYVALSRLKSLAGLQLLGMNEMSLQLDPLARGADKRFLVLSDEADANYAML
DEESMTQAHEKFILKSGGTLSKSVIDAYATLQTKRREQQQAQIGKKQKLGNQVSDKSDSTLLATRILLEESLSIAEISQA
RQLSQSTIMRHIAELKSQDPSLACDHLRPEDEVMTAVGNAYVAIKVANNPNDFNDDGSIKLRPIFEHLKQSADYNTIRLA
LIFITP
>Mature_646_residues
MRQSSALDILKTGQNVFLTGSAGSGKTYTLNQYIDYLRARRVPVAVTASTGIAATHMNGTTIHSWSGIGIKDELTDRDLT
NLSRKQFLADRLKDTAVLIIDEISMLHAKQINLVSQVLKHVRKNDKAFGGIQVVVAGDFFQLPPIGSKGESNREKFAFMS
EAWLDAKFHICYLSEQHRQVSDAANGGLDLDDILNQIRRQEVTFEAIAALEATFDQNVDIKRTRLYTHNLNVNKINDKEL
ADLSGEMMRFEATSVGDSKLVETLKKTVRTQDDLVLKVGSKVMFIKNNTELGVSNGTMGELIGFAAVKIDDSKESSDDLI
EDDDIGSDKDSDVGNDKQAAKSAKEKAKKDKAKVKKPTTQKMPVVRLNTGREVIAEPEEWIIEDETGDVLASYEQVPLCL
AWAITIHKSQGMTLEAAEIDLSRTFELGQGYVALSRLKSLAGLQLLGMNEMSLQLDPLARGADKRFLVLSDEADANYAML
DEESMTQAHEKFILKSGGTLSKSVIDAYATLQTKRREQQQAQIGKKQKLGNQVSDKSDSTLLATRILLEESLSIAEISQA
RQLSQSTIMRHIAELKSQDPSLACDHLRPEDEVMTAVGNAYVAIKVANNPNDFNDDGSIKLRPIFEHLKQSADYNTIRLA
LIFITP

Specific function: Unknown

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI82546872, Length=495, Percent_Identity=32.7272727272727, Blast_Score=227, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI25143421, Length=444, Percent_Identity=32.6576576576577, Blast_Score=201, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17534623, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17533663, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17537113, Length=179, Percent_Identity=30.1675977653631, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6321820, Length=490, Percent_Identity=33.6734693877551, Blast_Score=238, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6323579, Length=310, Percent_Identity=35.1612903225806, Blast_Score=171, Evalue=4e-43,
Organism=Drosophila melanogaster, GI19920652, Length=465, Percent_Identity=32.9032258064516, Blast_Score=233, Evalue=3e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71424; Mature: 71424

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00163 FUMARATE_LYASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSSALDILKTGQNVFLTGSAGSGKTYTLNQYIDYLRARRVPVAVTASTGIAATHMNGT
CCCCHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCC
TIHSWSGIGIKDELTDRDLTNLSRKQFLADRLKDTAVLIIDEISMLHAKQINLVSQVLKH
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHH
VRKNDKAFGGIQVVVAGDFFQLPPIGSKGESNREKFAFMSEAWLDAKFHICYLSEQHRQV
HHHCCCCCCCEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECHHHHHH
SDAANGGLDLDDILNQIRRQEVTFEAIAALEATFDQNVDIKRTRLYTHNLNVNKINDKEL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCHHH
ADLSGEMMRFEATSVGDSKLVETLKKTVRTQDDLVLKVGSKVMFIKNNTELGVSNGTMGE
HHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECCCCCCHHH
LIGFAAVKIDDSKESSDDLIEDDDIGSDKDSDVGNDKQAAKSAKEKAKKDKAKVKKPTTQ
HHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
KMPVVRLNTGREVIAEPEEWIIEDETGDVLASYEQVPLCLAWAITIHKSQGMTLEAAEID
CCCEEEECCCCHHHCCCHHHEEECCCCCHHHHHHCCCEEEEEEEEEECCCCCEEEEECCC
LSRTFELGQGYVALSRLKSLAGLQLLGMNEMSLQLDPLARGADKRFLVLSDEADANYAML
HHHHHHHCCCHHHHHHHHHHHCEEEECCCCCEEEECHHHCCCCCEEEEEECCCCCCEEEE
DEESMTQAHEKFILKSGGTLSKSVIDAYATLQTKRREQQQAQIGKKQKLGNQVSDKSDST
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCH
LLATRILLEESLSIAEISQARQLSQSTIMRHIAELKSQDPSLACDHLRPEDEVMTAVGNA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCE
YVAIKVANNPNDFNDDGSIKLRPIFEHLKQSADYNTIRLALIFITP
EEEEEECCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRQSSALDILKTGQNVFLTGSAGSGKTYTLNQYIDYLRARRVPVAVTASTGIAATHMNGT
CCCCHHHHHHHCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCEEEEECCCEEEEECCCC
TIHSWSGIGIKDELTDRDLTNLSRKQFLADRLKDTAVLIIDEISMLHAKQINLVSQVLKH
EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHH
VRKNDKAFGGIQVVVAGDFFQLPPIGSKGESNREKFAFMSEAWLDAKFHICYLSEQHRQV
HHHCCCCCCCEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECHHHHHH
SDAANGGLDLDDILNQIRRQEVTFEAIAALEATFDQNVDIKRTRLYTHNLNVNKINDKEL
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCHHH
ADLSGEMMRFEATSVGDSKLVETLKKTVRTQDDLVLKVGSKVMFIKNNTELGVSNGTMGE
HHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCEECCCCCCHHH
LIGFAAVKIDDSKESSDDLIEDDDIGSDKDSDVGNDKQAAKSAKEKAKKDKAKVKKPTTQ
HHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
KMPVVRLNTGREVIAEPEEWIIEDETGDVLASYEQVPLCLAWAITIHKSQGMTLEAAEID
CCCEEEECCCCHHHCCCHHHEEECCCCCHHHHHHCCCEEEEEEEEEECCCCCEEEEECCC
LSRTFELGQGYVALSRLKSLAGLQLLGMNEMSLQLDPLARGADKRFLVLSDEADANYAML
HHHHHHHCCCHHHHHHHHHHHCEEEECCCCCEEEECHHHCCCCCEEEEEECCCCCCEEEE
DEESMTQAHEKFILKSGGTLSKSVIDAYATLQTKRREQQQAQIGKKQKLGNQVSDKSDST
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCH
LLATRILLEESLSIAEISQARQLSQSTIMRHIAELKSQDPSLACDHLRPEDEVMTAVGNA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCE
YVAIKVANNPNDFNDDGSIKLRPIFEHLKQSADYNTIRLALIFITP
EEEEEECCCCCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA