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The map label for this gene is arcB [H]

Identifier: 93006619

GI number: 93006619

Start: 2219519

End: 2220619

Strand: Reverse

Name: arcB [H]

Synonym: Pcryo_1795

Alternate gene names: 93006619

Gene position: 2220619-2219519 (Counterclockwise)

Preceding gene: 93006622

Following gene: 93006618

Centisome position: 72.57

GC content: 43.14

Gene sequence:

>1101_bases
ATGTCTAAATTTATCGTATCACCCAAGGAAGGCGTGCCATTCGTTAGTGTACAAGCGATGGCTAAAATGATTCATGATTA
TGGCGTTGAGCAATGTATTACAGATCTAGTGGATGCTTTAGAGCAAGATTATCTTCGTTGGGATCAATTTGAAAAATCTT
CTCGCTTTGCTTCGCATTCAAAAAACGGTGTCATCGAGTTGATGCCAGTCAGCGATGGAGAGATGTTTGCCTGCAAATAT
GTCAATGGTCATCCAATCAATACCAAACGAAACTTGCAGACCGTGGCGGCGATGGGTATCTTGTCTGACGTCGAAACTGG
CTATCCTATTTTGCTGACAGAGATGTGTATCCTGACGGCATTACGTACGGCTGCCACATCAGCTATGTTGGCCAAACATT
GTGCGCCAAAAGACGTTACAAAACTGGCGTTAATAGGAAACGGCGCTCAGTCTGAATTTCAAGCATTGGGTATGAAAGCC
ATCATGGGTATCTCAGAAGTTCGTTTGTATGATGTTGATCCAGCAGCATCGCAGAAAACGGCTGACAACCTTTCAGACTC
AGGTTTGAAAGTCATTGTTTGTCGCACGTTAGAAGAAGCTGTTTTAGGTGCAGAGATCATTACTACCTGTACCGCTGATA
AAACCAATGCTACTATTTTACGAGACGATATAATCACAAAAGGTGTTTATATCAATGCGATAGGCGGTGATTGTCCTGGT
AAGACAGAGCTGGATAGCAATATATTAATGCGAGCAGATCATGTGATTGTGGAGTTTGAGCCTCAGACACGCATTGAGGG
AGAGATCCAAAATCTATCAAGCGACTTTCCTGTTACTGAATTTCATCGCATCCTCAAAGGTGAAGTGCAAGCTCGAACGT
CAGCGGATGATCTAATCGTATTTGATGGTGTTGGTTTTGCATCAGAAGACTTTACGGCGTTGGTATTTTTACGCGACTTG
ATCAGAGAGCAGGGAGGGTATGAGATTTTAGATCTGATCCCTCAGCAAGCTGACCCTAAAAACTTATATTCGGTAGTGAA
AGGCCATAGCAAAGATCATAGCCTAGTGACGAATGAAGCTGAATCTGTGGCTATGTCGTAA

Upstream 100 bases:

>100_bases
CCATATTTAATAACTTATTGACATTTTAACTGACAATTATAATTGGTAGCATATTAATTGTTGGTTCAACAAACAATATT
CATGAAAAGGAACAGCATTA

Downstream 100 bases:

>100_bases
GTGATTAATACAATAGTTATTGATGCAACAGTAATTAATACAAAAAAATGATAAGCACTTCTCATTTTGTGTAGCGTTTA
AAACTAACATCGTTTTTTAA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MSKFIVSPKEGVPFVSVQAMAKMIHDYGVEQCITDLVDALEQDYLRWDQFEKSSRFASHSKNGVIELMPVSDGEMFACKY
VNGHPINTKRNLQTVAAMGILSDVETGYPILLTEMCILTALRTAATSAMLAKHCAPKDVTKLALIGNGAQSEFQALGMKA
IMGISEVRLYDVDPAASQKTADNLSDSGLKVIVCRTLEEAVLGAEIITTCTADKTNATILRDDIITKGVYINAIGGDCPG
KTELDSNILMRADHVIVEFEPQTRIEGEIQNLSSDFPVTEFHRILKGEVQARTSADDLIVFDGVGFASEDFTALVFLRDL
IREQGGYEILDLIPQQADPKNLYSVVKGHSKDHSLVTNEAESVAMS

Sequences:

>Translated_366_residues
MSKFIVSPKEGVPFVSVQAMAKMIHDYGVEQCITDLVDALEQDYLRWDQFEKSSRFASHSKNGVIELMPVSDGEMFACKY
VNGHPINTKRNLQTVAAMGILSDVETGYPILLTEMCILTALRTAATSAMLAKHCAPKDVTKLALIGNGAQSEFQALGMKA
IMGISEVRLYDVDPAASQKTADNLSDSGLKVIVCRTLEEAVLGAEIITTCTADKTNATILRDDIITKGVYINAIGGDCPG
KTELDSNILMRADHVIVEFEPQTRIEGEIQNLSSDFPVTEFHRILKGEVQARTSADDLIVFDGVGFASEDFTALVFLRDL
IREQGGYEILDLIPQQADPKNLYSVVKGHSKDHSLVTNEAESVAMS
>Mature_365_residues
SKFIVSPKEGVPFVSVQAMAKMIHDYGVEQCITDLVDALEQDYLRWDQFEKSSRFASHSKNGVIELMPVSDGEMFACKYV
NGHPINTKRNLQTVAAMGILSDVETGYPILLTEMCILTALRTAATSAMLAKHCAPKDVTKLALIGNGAQSEFQALGMKAI
MGISEVRLYDVDPAASQKTADNLSDSGLKVIVCRTLEEAVLGAEIITTCTADKTNATILRDDIITKGVYINAIGGDCPGK
TELDSNILMRADHVIVEFEPQTRIEGEIQNLSSDFPVTEFHRILKGEVQARTSADDLIVFDGVGFASEDFTALVFLRDLI
REQGGYEILDLIPQQADPKNLYSVVKGHSKDHSLVTNEAESVAMS

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=203, Percent_Identity=29.064039408867, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4503065, Length=203, Percent_Identity=29.064039408867, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 39956; Mature: 39825

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFIVSPKEGVPFVSVQAMAKMIHDYGVEQCITDLVDALEQDYLRWDQFEKSSRFASHS
CCCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNGVIELMPVSDGEMFACKYVNGHPINTKRNLQTVAAMGILSDVETGYPILLTEMCILTA
CCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRTAATSAMLAKHCAPKDVTKLALIGNGAQSEFQALGMKAIMGISEVRLYDVDPAASQKT
HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCHHHEEEEECCCCCCHHH
ADNLSDSGLKVIVCRTLEEAVLGAEIITTCTADKTNATILRDDIITKGVYINAIGGDCPG
HCCCCCCCCEEEEEHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHCCEEEEEECCCCCC
KTELDSNILMRADHVIVEFEPQTRIEGEIQNLSSDFPVTEFHRILKGEVQARTSADDLIV
CCCCCCCCEEEECEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
FDGVGFASEDFTALVFLRDLIREQGGYEILDLIPQQADPKNLYSVVKGHSKDHSLVTNEA
EECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCH
ESVAMS
HHHCCC
>Mature Secondary Structure 
SKFIVSPKEGVPFVSVQAMAKMIHDYGVEQCITDLVDALEQDYLRWDQFEKSSRFASHS
CCCCCCCCCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNGVIELMPVSDGEMFACKYVNGHPINTKRNLQTVAAMGILSDVETGYPILLTEMCILTA
CCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LRTAATSAMLAKHCAPKDVTKLALIGNGAQSEFQALGMKAIMGISEVRLYDVDPAASQKT
HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCHHHEEEEECCCCCCHHH
ADNLSDSGLKVIVCRTLEEAVLGAEIITTCTADKTNATILRDDIITKGVYINAIGGDCPG
HCCCCCCCCEEEEEHHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHCCEEEEEECCCCCC
KTELDSNILMRADHVIVEFEPQTRIEGEIQNLSSDFPVTEFHRILKGEVQARTSADDLIV
CCCCCCCCEEEECEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEE
FDGVGFASEDFTALVFLRDLIREQGGYEILDLIPQQADPKNLYSVVKGHSKDHSLVTNEA
EECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCH
ESVAMS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9375792 [H]