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The map label for this gene is yiaJ [C]

Identifier: 93006384

GI number: 93006384

Start: 1914306

End: 1915166

Strand: Reverse

Name: yiaJ [C]

Synonym: Pcryo_1560

Alternate gene names: 93006384

Gene position: 1915166-1914306 (Counterclockwise)

Preceding gene: 93006386

Following gene: 93006379

Centisome position: 62.59

GC content: 43.79

Gene sequence:

>861_bases
ATGCCAGCAGCTGAAAACCTGATAGACAATCTTACTAGGATGAATAAAAACCAAGGCGGCGTACAATCGCTTGAGATTGG
GCTGTCGATATTAGACGTGCTCATCGATTGTAACGAGCCGATGATGCTAAAGGATATTGCACAAGCCATGCAAATGCATC
CAGCAAAGTGCCACCGTTATTTGGTCAGTCTTATTCGTAAACACTATGCTCGCCAGCTCAGTGATGGACGTTATGGACTT
GGTGATAGAGTTCATGCAATGGGCGCGCTAGGAGCAGTAGGTCATAGTGGGTTTAATCAAAATAATATCTTGGATCGTCT
GACGCATATTGCTAATGAGATCAAAGACACGCTTAACTGCGGTGTACAAATCGCTAAATGGTTTAGCGAAGGACCGATTA
TCATTCAATCCGTTGAACCAGACACCACTATTAGTATTATTACTCGCATCGGATCGCGTATGCCGCTGACTACATCTGCG
ACAGGTCATTTGTTTGCAAGCTATCAGCCAGACGCCATTATCAAACCCTTGGTCATCACAGAATGGCAGGCGAAACAAGA
GTCAGCAATAACAGAGAAATGGCAGCACTTTAACCAGTTGCGAGCGAAAGTTCGAACCCAAGGCTATGCGACTGTTACTG
GTGATATGTTAATGGGGATTAATGCGATTACTATTCCCGTTATCATACCGCAGCTCTCAACCACTGCGAATCTATATGAC
AAAGACAAACTATCTGTTGAAAGTTTGTCTTTGGAGTATGCCATTACTATCATTGGTACCACAGAGCAGTTGCCCATGAG
TGATCAGCGTAATGTGGTCGAGCAAATATTAGCAATTGCACAACGTTATCAAATAGTGTAG

Upstream 100 bases:

>100_bases
CTTAAAGAGTAAAAGATACCTATTATGACATTAAGTCTTTATTTCAATTTTCTAATATTGTATTGATAACGCATTCAGTT
AATCATTCACAGAGTAAACC

Downstream 100 bases:

>100_bases
CTCGTAAAATAGCTAAGAATTATCTTAGCTATTTTATAAAGAATACTCTAAACGCTAAAAAATATTACTCACCGGCAGGC
GCGACTTCTCGTGCTTCAGC

Product: regulatory proteins, IclR

Products: NA

Alternate protein names: Transcriptional Regulator IclR Family; Transcriptional Regulator; Regulatory Proteins IclR; Regulatory Protein IclR; Transcriptional Regulatory Protein; Transcriptional Regulator Family Protein; Hmg Transcriptional Repressor; Regulator; Transcriptional Regulator IclR Family Protein; Regulatory Protein; Transcription Regulator Protein; Transcriptional Regulator Iclr Family; Transcriptional Regulator Protein; IclR-Family Transcriptional Regulator; TRANSCRIPTIONal REGULATOR IclR Family

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MPAAENLIDNLTRMNKNQGGVQSLEIGLSILDVLIDCNEPMMLKDIAQAMQMHPAKCHRYLVSLIRKHYARQLSDGRYGL
GDRVHAMGALGAVGHSGFNQNNILDRLTHIANEIKDTLNCGVQIAKWFSEGPIIIQSVEPDTTISIITRIGSRMPLTTSA
TGHLFASYQPDAIIKPLVITEWQAKQESAITEKWQHFNQLRAKVRTQGYATVTGDMLMGINAITIPVIIPQLSTTANLYD
KDKLSVESLSLEYAITIIGTTEQLPMSDQRNVVEQILAIAQRYQIV

Sequences:

>Translated_286_residues
MPAAENLIDNLTRMNKNQGGVQSLEIGLSILDVLIDCNEPMMLKDIAQAMQMHPAKCHRYLVSLIRKHYARQLSDGRYGL
GDRVHAMGALGAVGHSGFNQNNILDRLTHIANEIKDTLNCGVQIAKWFSEGPIIIQSVEPDTTISIITRIGSRMPLTTSA
TGHLFASYQPDAIIKPLVITEWQAKQESAITEKWQHFNQLRAKVRTQGYATVTGDMLMGINAITIPVIIPQLSTTANLYD
KDKLSVESLSLEYAITIIGTTEQLPMSDQRNVVEQILAIAQRYQIV
>Mature_285_residues
PAAENLIDNLTRMNKNQGGVQSLEIGLSILDVLIDCNEPMMLKDIAQAMQMHPAKCHRYLVSLIRKHYARQLSDGRYGLG
DRVHAMGALGAVGHSGFNQNNILDRLTHIANEIKDTLNCGVQIAKWFSEGPIIIQSVEPDTTISIITRIGSRMPLTTSAT
GHLFASYQPDAIIKPLVITEWQAKQESAITEKWQHFNQLRAKVRTQGYATVTGDMLMGINAITIPVIIPQLSTTANLYDK
DKLSVESLSLEYAITIIGTTEQLPMSDQRNVVEQILAIAQRYQIV

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31735; Mature: 31604

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAAENLIDNLTRMNKNQGGVQSLEIGLSILDVLIDCNEPMMLKDIAQAMQMHPAKCHRY
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
LVSLIRKHYARQLSDGRYGLGDRVHAMGALGAVGHSGFNQNNILDRLTHIANEIKDTLNC
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GVQIAKWFSEGPIIIQSVEPDTTISIITRIGSRMPLTTSATGHLFASYQPDAIIKPLVIT
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHCCEEEE
EWQAKQESAITEKWQHFNQLRAKVRTQGYATVTGDMLMGINAITIPVIIPQLSTTANLYD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHCCCCEEEEEEECCCCCHHCCCC
KDKLSVESLSLEYAITIIGTTEQLPMSDQRNVVEQILAIAQRYQIV
CCCCCHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAAENLIDNLTRMNKNQGGVQSLEIGLSILDVLIDCNEPMMLKDIAQAMQMHPAKCHRY
CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHH
LVSLIRKHYARQLSDGRYGLGDRVHAMGALGAVGHSGFNQNNILDRLTHIANEIKDTLNC
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GVQIAKWFSEGPIIIQSVEPDTTISIITRIGSRMPLTTSATGHLFASYQPDAIIKPLVIT
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCHHCCEEEE
EWQAKQESAITEKWQHFNQLRAKVRTQGYATVTGDMLMGINAITIPVIIPQLSTTANLYD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHCCCCEEEEEEECCCCCHHCCCC
KDKLSVESLSLEYAITIIGTTEQLPMSDQRNVVEQILAIAQRYQIV
CCCCCHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA