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The map label for this gene is alr [H]

Identifier: 93006286

GI number: 93006286

Start: 1801084

End: 1802190

Strand: Direct

Name: alr [H]

Synonym: Pcryo_1460

Alternate gene names: 93006286

Gene position: 1801084-1802190 (Clockwise)

Preceding gene: 93006285

Following gene: 93006287

Centisome position: 58.86

GC content: 45.8

Gene sequence:

>1107_bases
ATGCGCACAATTACGATCAAGCCTGCCGCCATTACTCATAATCTTAATCAAGTAAAAGCGTTAGCACCAAAATCTAACGT
CCTTGCGATGGTAAAAGCCAATGCCTATGGACATGGCGTCGCCGCCGTCCTACCAGCGTTACAGCAAGCAGATGGTATCG
GGGTCGCTACTTTAAGAGAAGCGTTAGAAGCACGGCAATTGGGCTGGGATAAAACCATTGGTCTTATTGAAGGGGCCTTT
ACTGTTGATGAGTGGCAACAAGCCATTGAGCATGATATCAGTTGCGTGATTCATCATGCGCCGCAATTGGACTGGGCATT
AGAGCAAATACCACCTGTTGATAGCGCCACTAGAATGGTTTGGATAAAGTACAACACGGGTATGAATCGTTTAGGTTTTA
ATAACCAAACGCTTAGTTCAGCCGCAAAATCTCTGCATGATGCTGGCTATCAGCTGATTTTGACCACCCATTTTGCCAAT
GCCGACAATCAAGATCACCCATTAAATGCCATACAAATCCAGCGTTTTAATGACATGCTAAGTACTTTACGACAAACAGT
CAGTACTAATATTAAAGGATCGTTGTGCAACTCTGCTGGTATCGTTAATTTCCCAGAGCATCATCATGATTGGGTACGTC
CAGGCATTATGTTATATGGCAGTGCGCCTGTTATCGACCAAAGCGCGTATACGCTAAATTTGCAGCCAGCTATGGAATTT
AGCGCACAAATTATTGCCTTGCAGACCGTACAAGCTGGCGACGCCATCGGTTATGGCAGCCGCTGGATAGCCCAGCAAGA
TGTTAAAACAGCTCTCGTTAGTATTGGTTATGGTGATGGATATCCCCGCGTTGTCAATGGGGATGCTTATGTTTCAGTCA
TTGACGCCGTAAATCAGCAACGCTACTCATGTGCAGTGATTGGGCGTGTCGCAATGGATATGATTGTCATCGATGTGAGC
GCTGTACCAGAGAGTAGCGCTTTAAATAGCAAGGTCATACTATGGGGTGATGCGCCGCATGTTGATGAAGTTGCCACCCA
TGCTGATACGATTGGCTATGAGCTATTGTGTCGTCTAAGCGTACGCCCAAATCGTATACAGATGTAA

Upstream 100 bases:

>100_bases
AATTGCTCATAAAAATGGCCAGTGACTCATCAACTCAATTGATGAATTACTGGCTTTATAAATTTATTCCTTCATAACTT
TGCTAAATAAGAAGCTTATT

Downstream 100 bases:

>100_bases
TCGCCATGTCAGATAATGTCTCATCGAATGCAGCTTTGCATGACTGATAAATCATGGCAAATTGGATATTTACATTGAGA
GTAATTGCGCTATACTAAAA

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MRTITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQADGIGVATLREALEARQLGWDKTIGLIEGAF
TVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMVWIKYNTGMNRLGFNNQTLSSAAKSLHDAGYQLILTTHFAN
ADNQDHPLNAIQIQRFNDMLSTLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAMEF
SAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDAVNQQRYSCAVIGRVAMDMIVIDVS
AVPESSALNSKVILWGDAPHVDEVATHADTIGYELLCRLSVRPNRIQM

Sequences:

>Translated_368_residues
MRTITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQADGIGVATLREALEARQLGWDKTIGLIEGAF
TVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMVWIKYNTGMNRLGFNNQTLSSAAKSLHDAGYQLILTTHFAN
ADNQDHPLNAIQIQRFNDMLSTLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAMEF
SAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDAVNQQRYSCAVIGRVAMDMIVIDVS
AVPESSALNSKVILWGDAPHVDEVATHADTIGYELLCRLSVRPNRIQM
>Mature_368_residues
MRTITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQADGIGVATLREALEARQLGWDKTIGLIEGAF
TVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMVWIKYNTGMNRLGFNNQTLSSAAKSLHDAGYQLILTTHFAN
ADNQDHPLNAIQIQRFNDMLSTLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAMEF
SAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDAVNQQRYSCAVIGRVAMDMIVIDVS
AVPESSALNSKVILWGDAPHVDEVATHADTIGYELLCRLSVRPNRIQM

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1790487, Length=364, Percent_Identity=34.8901098901099, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1787439, Length=361, Percent_Identity=34.6260387811634, Blast_Score=206, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 40094; Mature: 40094

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQADGIGVATLRE
CCEEEECCHHHHCCHHHHHEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHH
ALEARQLGWDKTIGLIEGAFTVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMV
HHHHHHCCCCHHHHHHCCCEEHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCCCEEE
WIKYNTGMNRLGFNNQTLSSAAKSLHDAGYQLILTTHFANADNQDHPLNAIQIQRFNDML
EEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCEEHHHHHHHH
STLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAMEF
HHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCEEEEECCHHHHC
SAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDAVNQQ
CEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHEEEECCCCCCEEECCCHHHHHHHHHCCC
RYSCAVIGRVAMDMIVIDVSAVPESSALNSKVILWGDAPHVDEVATHADTIGYELLCRLS
HHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCEEEEEEEC
VRPNRIQM
CCCCCCCC
>Mature Secondary Structure
MRTITIKPAAITHNLNQVKALAPKSNVLAMVKANAYGHGVAAVLPALQQADGIGVATLRE
CCEEEECCHHHHCCHHHHHEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHH
ALEARQLGWDKTIGLIEGAFTVDEWQQAIEHDISCVIHHAPQLDWALEQIPPVDSATRMV
HHHHHHCCCCHHHHHHCCCEEHHHHHHHHHHCCEEEEECCCCCCHHHHHCCCCCCCCEEE
WIKYNTGMNRLGFNNQTLSSAAKSLHDAGYQLILTTHFANADNQDHPLNAIQIQRFNDML
EEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCEEHHHHHHHH
STLRQTVSTNIKGSLCNSAGIVNFPEHHHDWVRPGIMLYGSAPVIDQSAYTLNLQPAMEF
HHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCEEEEECCHHHHC
SAQIIALQTVQAGDAIGYGSRWIAQQDVKTALVSIGYGDGYPRVVNGDAYVSVIDAVNQQ
CEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHEEEECCCCCCEEECCCHHHHHHHHHCCC
RYSCAVIGRVAMDMIVIDVSAVPESSALNSKVILWGDAPHVDEVATHADTIGYELLCRLS
HHHHHHHHHHHHEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCEEEEEEEC
VRPNRIQM
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA