Click here to switch to the map view.

The map label for this gene is 93006140

Identifier: 93006140

GI number: 93006140

Start: 1602618

End: 1603904

Strand: Reverse

Name: 93006140

Synonym: Pcryo_1312

Alternate gene names: NA

Gene position: 1603904-1602618 (Counterclockwise)

Preceding gene: 93006141

Following gene: 93006139

Centisome position: 52.42

GC content: 46.78

Gene sequence:

>1287_bases
ATGACCACACAACCACTCAATAACCCAAGCGCCACAGGCGATACTCTCTCCGCGCAGCAAGAAGGCTTTAGCTGGCGAAT
CTTTGGTCCCGGTATTCTGATGGCGACTGCTGCTATTGGCGGCTCGCATCTGATTTCATCGACACAGGCTGGCGCGTTAT
ATGGCTGGCAGCTGGCGATTATGATTATATTAGCCAACGTCTTTAAGTATCCGTTCTTCCGCTTTGCCACCGATTATGTC
TACGACACTGGCGAGAGCTTAATCGCAGGCTATGCCAAACGCTCAAAAGCTTATCTCTGGATTTATTTTATCCTATCTAT
TTTATCGGCGGTGATTAGTACGGGGGCTGTGACATTGCTTGCGGCAGTGATATTGGGCTTTATGCTTCCCGCATCTGTAG
GACTATCAAGTATTGCCTTAGCTGTCATTATCGTTGCTGTATGTTGGTTTTTTCTGATTGCTGGTCATTATAAATTGCTT
GACGGCGTGACCAAGTGGATTATGATTGCGCTCGTATCTGCAACCGTGTTAGCGGTGATGATTGCTGCTGGTAAGCCGAC
GGTTATGGTGGCGGATTTTGTCCCTGCCTCTCCTTGGAACTTGGCGACTTTAGGGTTTATTGTGGCTCTTATGGGTTGGA
TGCCAGCACCACTTGAGTTCGCTGCCATCACCTCGATGTGGACATCAGCCAAGAGAAAAGCGGACAATACCACTCACCGT
CAGGGCTTACTGGATTTTAATGTCGGTTTCTTAGTTTCCGCTATTTTAGCCTTGTTCTTTTTAGCGTTGGGCGTTTTCGT
ACAATACGGCTCAGGTCAAGAGATTCAAACCGCAGGTGTCGCTTATATTGATCAGCTTATCAATATGTATACCGCCACTA
TCGGTGAATGGTCAAGACTACTGGTCGCCTTTGTCGCCTTTATGTGTATGTTTGGCACCACTATTACCTGTGCGGATGGC
TATGGACGTGCCAACGCCGAATGCTGGCGCTTACTAAAAGGTGAAGACGAGATTAATAAAAAGCAAATCGCCTTTTGGAC
CACCTATGCTATCGGTGGCGGTCTTTTGATTATCAGCTTCTTTGCCGGACAATTAGGCGCTATGCTGAAGTTTGCGATGA
TATCCGCCTTTATATCCGCGCCTATCTTTGGTTGGTTAAACTATTCGCTCGTGAAAAACCATAAAAAGCTATCAGCCGGT
ATGAACGCCTATTCGATTGCAGGGCTTGTATTCTTAGGTGGCTTTACCTTGTTATTCCTAGCTAGCCTTGCAGGTATTAT
TGGTTAA

Upstream 100 bases:

>100_bases
AAACAGTACTAATGAATAGTATTAAGCGATGCGCTCATGATCATTGGCAAACTGACACAGGTAAGTGATGATTTGCCGTT
TTAACCATTTCGAGGTAAGC

Downstream 100 bases:

>100_bases
AAATAAAGGTTAGCCAATCTAGCTAATAATAGACTTGATAGAGTAAAAGCCCTTTTAGCAAGACTAAGAGGGCTTTTTTG
TAGACAACGATAAAACGCTT

Product: manganese transporter NRAMP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTTQPLNNPSATGDTLSAQQEGFSWRIFGPGILMATAAIGGSHLISSTQAGALYGWQLAIMIILANVFKYPFFRFATDYV
YDTGESLIAGYAKRSKAYLWIYFILSILSAVISTGAVTLLAAVILGFMLPASVGLSSIALAVIIVAVCWFFLIAGHYKLL
DGVTKWIMIALVSATVLAVMIAAGKPTVMVADFVPASPWNLATLGFIVALMGWMPAPLEFAAITSMWTSAKRKADNTTHR
QGLLDFNVGFLVSAILALFFLALGVFVQYGSGQEIQTAGVAYIDQLINMYTATIGEWSRLLVAFVAFMCMFGTTITCADG
YGRANAECWRLLKGEDEINKKQIAFWTTYAIGGGLLIISFFAGQLGAMLKFAMISAFISAPIFGWLNYSLVKNHKKLSAG
MNAYSIAGLVFLGGFTLLFLASLAGIIG

Sequences:

>Translated_428_residues
MTTQPLNNPSATGDTLSAQQEGFSWRIFGPGILMATAAIGGSHLISSTQAGALYGWQLAIMIILANVFKYPFFRFATDYV
YDTGESLIAGYAKRSKAYLWIYFILSILSAVISTGAVTLLAAVILGFMLPASVGLSSIALAVIIVAVCWFFLIAGHYKLL
DGVTKWIMIALVSATVLAVMIAAGKPTVMVADFVPASPWNLATLGFIVALMGWMPAPLEFAAITSMWTSAKRKADNTTHR
QGLLDFNVGFLVSAILALFFLALGVFVQYGSGQEIQTAGVAYIDQLINMYTATIGEWSRLLVAFVAFMCMFGTTITCADG
YGRANAECWRLLKGEDEINKKQIAFWTTYAIGGGLLIISFFAGQLGAMLKFAMISAFISAPIFGWLNYSLVKNHKKLSAG
MNAYSIAGLVFLGGFTLLFLASLAGIIG
>Mature_427_residues
TTQPLNNPSATGDTLSAQQEGFSWRIFGPGILMATAAIGGSHLISSTQAGALYGWQLAIMIILANVFKYPFFRFATDYVY
DTGESLIAGYAKRSKAYLWIYFILSILSAVISTGAVTLLAAVILGFMLPASVGLSSIALAVIIVAVCWFFLIAGHYKLLD
GVTKWIMIALVSATVLAVMIAAGKPTVMVADFVPASPWNLATLGFIVALMGWMPAPLEFAAITSMWTSAKRKADNTTHRQ
GLLDFNVGFLVSAILALFFLALGVFVQYGSGQEIQTAGVAYIDQLINMYTATIGEWSRLLVAFVAFMCMFGTTITCADGY
GRANAECWRLLKGEDEINKKQIAFWTTYAIGGGLLIISFFAGQLGAMLKFAMISAFISAPIFGWLNYSLVKNHKKLSAGM
NAYSIAGLVFLGGFTLLFLASLAGIIG

Specific function: Unknown

COG id: COG1914

COG function: function code P; Mn2+ and Fe2+ transporters of the NRAMP family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45970; Mature: 45839

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQPLNNPSATGDTLSAQQEGFSWRIFGPGILMATAAIGGSHLISSTQAGALYGWQLAI
CCCCCCCCCCCCCCCCHHHHCCCEEEEECCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
MIILANVFKYPFFRFATDYVYDTGESLIAGYAKRSKAYLWIYFILSILSAVISTGAVTLL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AAVILGFMLPASVGLSSIALAVIIVAVCWFFLIAGHYKLLDGVTKWIMIALVSATVLAVM
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAAGKPTVMVADFVPASPWNLATLGFIVALMGWMPAPLEFAAITSMWTSAKRKADNTTHR
HHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
QGLLDFNVGFLVSAILALFFLALGVFVQYGSGQEIQTAGVAYIDQLINMYTATIGEWSRL
CCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAFVAFMCMFGTTITCADGYGRANAECWRLLKGEDEINKKQIAFWTTYAIGGGLLIISF
HHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHEEEHHHHCCHHHHHHH
FAGQLGAMLKFAMISAFISAPIFGWLNYSLVKNHKKLSAGMNAYSIAGLVFLGGFTLLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ASLAGIIG
HHHHHHCC
>Mature Secondary Structure 
TTQPLNNPSATGDTLSAQQEGFSWRIFGPGILMATAAIGGSHLISSTQAGALYGWQLAI
CCCCCCCCCCCCCCCHHHHCCCEEEEECCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHH
MIILANVFKYPFFRFATDYVYDTGESLIAGYAKRSKAYLWIYFILSILSAVISTGAVTLL
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AAVILGFMLPASVGLSSIALAVIIVAVCWFFLIAGHYKLLDGVTKWIMIALVSATVLAVM
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAAGKPTVMVADFVPASPWNLATLGFIVALMGWMPAPLEFAAITSMWTSAKRKADNTTHR
HHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
QGLLDFNVGFLVSAILALFFLALGVFVQYGSGQEIQTAGVAYIDQLINMYTATIGEWSRL
CCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAFVAFMCMFGTTITCADGYGRANAECWRLLKGEDEINKKQIAFWTTYAIGGGLLIISF
HHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHCCCCCCCCHHHHEEEHHHHCCHHHHHHH
FAGQLGAMLKFAMISAFISAPIFGWLNYSLVKNHKKLSAGMNAYSIAGLVFLGGFTLLFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ASLAGIIG
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]