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The map label for this gene is nrdB [H]

Identifier: 93005945

GI number: 93005945

Start: 1346698

End: 1347831

Strand: Reverse

Name: nrdB [H]

Synonym: Pcryo_1117

Alternate gene names: 93005945

Gene position: 1347831-1346698 (Counterclockwise)

Preceding gene: 93005946

Following gene: 93005944

Centisome position: 44.05

GC content: 43.47

Gene sequence:

>1134_bases
ATGACTTATTCGATTTTTTCCCAAACGCCAAACAATGCGCTAACAGAGCCGATGTTTTTTGGTAATCCGGTCAACGTGGC
GCGTTACGACCAACAAAAGCACCCTATCTTTGAGCAGCTGATTGAAAAGCAGTTGTCGTTCTTTTGGCGTCCAGAAGAAG
TTGATGTATCAAAAGATCGTATGGACTTTGGCAACCTGTCTTCGCATGAGCAGCATATATTTTTGAGTAACCTCAAATAC
CAGACCCTACTCGACTCTATCCAAGGCCGTAGCCCAAACGTGGTGCTATTGCCGCTCGTGTCTATCCCTGAACTTGAGAC
TTGGATTGAGACGTGGACGTTTTCTGAAACCATTCACTCGCGCAGCTATACCCATATCATTCGTAATATTATCAATGACC
CTGCTATCGTCTTTGATGACATCATGCAAAACGAGCACATCCTAGGGCGCGCGGCGGACATCGCTAAGTATTATGATGAT
TTGTATTACAGCTCATCGCTATATAACCTATACGGTGCAGGCACGCATACGATCAATGGTAAGCAAATTACCATCGATTT
AAAATCACTGAAAAAGCAGCTTTATTTGTGCTTGATGGCAGTCAATGTCCTAGAAGCCATTCGCTTTTATGTATCATTTG
CTTGCTCATTTGCCTTTGCTGAGCGTAAGCTAATGGAAGGTAATGCCAAGATTATTAAATTGATCGCTCGTGATGAGGCG
CTACATTTAACAGGTACTCAGCATATCCTTAACCTCATGCGCATCGGTCGTGATGATCCGGAGATGGTCGATATCGCTAA
AGAATGCTACGAAGAAAGCATCGAGATATTCCGTAAAGCAGCTGAGCAAGAAAAAGAATGGGCAGGCTATCTGTTCAAAG
ACGGTTCGATGATTGGGCTGAATAAAGACATTCTTTGCCAATATATCGAATACATCACCAATTTACGTATGGAAGCGGTT
GGCTTACCAGTCGCATTCCCGAACTCTAAATCAAATCCGATTCCATGGATTAACACGTGGTTGTCGTCTGACAACGTACA
AGTTGCCCCGCAAGAAACAGAGATTAGCTCGTACTTGGTCGGTCAGATTGATTCAGACTTATCAGACAGCGATTTTGATG
ATTTTGAGTTGTAG

Upstream 100 bases:

>100_bases
AGAACAAATATCTTTAGAGCACTTGTAATATAATCCAATCAAACCAAATCTAGTCAAAACCCTATAACTTAATAACCATA
TCAATGATAAAGGCAGTCCC

Downstream 100 bases:

>100_bases
AAGATAGTTTTTCAAGATTGAGCTTTTAATATAGTCGATTCATCATAGAATAAGTGTAGTGCTGCTGGGATAAGTTTTGC
GCAGCCTCTGTCTGCGTAGG

Product: ribonucleotide-diphosphate reductase subunit beta

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTYSIFSQTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRMDFGNLSSHEQHIFLSNLKY
QTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDD
LYYSSSLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
LHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAV
GLPVAFPNSKSNPIPWINTWLSSDNVQVAPQETEISSYLVGQIDSDLSDSDFDDFEL

Sequences:

>Translated_377_residues
MTYSIFSQTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRMDFGNLSSHEQHIFLSNLKY
QTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDD
LYYSSSLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
LHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAV
GLPVAFPNSKSNPIPWINTWLSSDNVQVAPQETEISSYLVGQIDSDLSDSDFDDFEL
>Mature_376_residues
TYSIFSQTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRMDFGNLSSHEQHIFLSNLKYQ
TLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDL
YYSSSLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEAL
HLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVG
LPVAFPNSKSNPIPWINTWLSSDNVQVAPQETEISSYLVGQIDSDLSDSDFDDFEL

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1788567, Length=377, Percent_Identity=73.7400530503979, Blast_Score=603, Evalue=1e-174,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 43379; Mature: 43248

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYSIFSQTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDR
CCEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHC
MDFGNLSSHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHS
CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSSSLYNLYGAGTHTING
HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEECC
KQITIDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCE
LHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGL
EEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEECC
NKDILCQYIEYITNLRMEAVGLPVAFPNSKSNPIPWINTWLSSDNVQVAPQETEISSYLV
CHHHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCCHHHHEECCCCEEECCCHHHHHHHHH
GQIDSDLSDSDFDDFEL
HHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TYSIFSQTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDR
CEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHC
MDFGNLSSHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHS
CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH
RSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSSSLYNLYGAGTHTING
HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEECC
KQITIDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEA
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCE
LHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGL
EEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCEECC
NKDILCQYIEYITNLRMEAVGLPVAFPNSKSNPIPWINTWLSSDNVQVAPQETEISSYLV
CHHHHHHHHHHHHCCCHHHHCCCEECCCCCCCCCCHHHHEECCCCEEECCCHHHHHHHHH
GQIDSDLSDSDFDDFEL
HHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]