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The map label for this gene is yxjO [H]

Identifier: 93005851

GI number: 93005851

Start: 1222960

End: 1223829

Strand: Direct

Name: yxjO [H]

Synonym: Pcryo_1023

Alternate gene names: 93005851

Gene position: 1222960-1223829 (Clockwise)

Preceding gene: 93005848

Following gene: 93005854

Centisome position: 39.97

GC content: 44.83

Gene sequence:

>870_bases
ATGATAAATATCACATGGCTACGTACTTTTTGTACCTTGGTTGAAATTGGACATTTTACTCATACTGCCGAGCGTCTATA
TATGACGCAGTCAGGGGTTAGTCAACATATACGTAAGCTTGAGAGTCAGCTAGAGATTGACTTGCTTATTCGTCAAGGTA
AACAGTTTTCATTGACAGATGCAGGTGAGCATTTGTATCGAGAGGCAGAGGATATCTTGCAGCGCTTATCACGCTTAGAG
CAGCGTATCGGTGACGATCCGTATAATGAGGGATTGGTGCGAATTATGTCGCCTGGCAGCGTTGGTTTAAAGCTCTATCC
TAAGCTGTTAACATTACAAGAGCAGCATCCACAGCTGGTGATTGATTACCGTTTTGCCCCCAATACAGATATAGAGCAGG
CGCTCTCCAAGCATGAGATTGATATAGGTTTTATGACAACTATCTCGGATGATGAGACGGTCAGCTGCAAGCCGGTGGCT
CAAGAAGCGCTACTACTGGTGACACCAGTCACGATGATGGAGCCTAGCTGGGAAGCACTTACCAAGCTTGGATTTATTGA
TCATCCTGATGGCGCACATCATGCCAGTTTACTATTGAGTGCCAATTATCCTGAATTTGGACACATCAATGACTTTATTA
AAAAAGGTTTTTCTAATCAGATAGGTATGATTTTAGAGCCGGTAAGTAGGGGGCTTGGATTTACCGTATTACCAGCGCAC
GCAGTTGCCGCGTATCCAAACCCGCAGCTGCTTAAATGTCATCAGCTGCCAGTCTCAGTTAGTGAAACCCTGTACTTTGC
TGTACGCCGCCAGCAGGTACTGCCAAATAGGATGCAAACCGTCCTCAATGAGGTGAAAAAATGGCTATAA

Upstream 100 bases:

>100_bases
TTATTCATGGTTTGTACTCCTTTTTGATATGGGAGTAGTTTACAAAGTTATGTATATTACGTAAAATTATCATTTATTAT
AAAGATAAGTATGTACTGTA

Downstream 100 bases:

>100_bases
CAGTGGCTATAACAGCGTTTAAGAGAGTATCTTAAGTAGCCGTATAAAGTCTACTTGATACTTTGACCTAGTTTTATTGC
CGCAGCAATATTGGTGGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MINITWLRTFCTLVEIGHFTHTAERLYMTQSGVSQHIRKLESQLEIDLLIRQGKQFSLTDAGEHLYREAEDILQRLSRLE
QRIGDDPYNEGLVRIMSPGSVGLKLYPKLLTLQEQHPQLVIDYRFAPNTDIEQALSKHEIDIGFMTTISDDETVSCKPVA
QEALLLVTPVTMMEPSWEALTKLGFIDHPDGAHHASLLLSANYPEFGHINDFIKKGFSNQIGMILEPVSRGLGFTVLPAH
AVAAYPNPQLLKCHQLPVSVSETLYFAVRRQQVLPNRMQTVLNEVKKWL

Sequences:

>Translated_289_residues
MINITWLRTFCTLVEIGHFTHTAERLYMTQSGVSQHIRKLESQLEIDLLIRQGKQFSLTDAGEHLYREAEDILQRLSRLE
QRIGDDPYNEGLVRIMSPGSVGLKLYPKLLTLQEQHPQLVIDYRFAPNTDIEQALSKHEIDIGFMTTISDDETVSCKPVA
QEALLLVTPVTMMEPSWEALTKLGFIDHPDGAHHASLLLSANYPEFGHINDFIKKGFSNQIGMILEPVSRGLGFTVLPAH
AVAAYPNPQLLKCHQLPVSVSETLYFAVRRQQVLPNRMQTVLNEVKKWL
>Mature_289_residues
MINITWLRTFCTLVEIGHFTHTAERLYMTQSGVSQHIRKLESQLEIDLLIRQGKQFSLTDAGEHLYREAEDILQRLSRLE
QRIGDDPYNEGLVRIMSPGSVGLKLYPKLLTLQEQHPQLVIDYRFAPNTDIEQALSKHEIDIGFMTTISDDETVSCKPVA
QEALLLVTPVTMMEPSWEALTKLGFIDHPDGAHHASLLLSANYPEFGHINDFIKKGFSNQIGMILEPVSRGLGFTVLPAH
AVAAYPNPQLLKCHQLPVSVSETLYFAVRRQQVLPNRMQTVLNEVKKWL

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=245, Percent_Identity=28.1632653061224, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=23.1543624161074, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788297, Length=169, Percent_Identity=28.9940828402367, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787806, Length=170, Percent_Identity=22.9411764705882, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=24.3801652892562, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32781; Mature: 32781

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINITWLRTFCTLVEIGHFTHTAERLYMTQSGVSQHIRKLESQLEIDLLIRQGKQFSLTD
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCH
AGEHLYREAEDILQRLSRLEQRIGDDPYNEGLVRIMSPGSVGLKLYPKLLTLQEQHPQLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCCEE
IDYRFAPNTDIEQALSKHEIDIGFMTTISDDETVSCKPVAQEALLLVTPVTMMEPSWEAL
EEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCEECCHHHHHHHHEECCHHHCCCCHHHH
TKLGFIDHPDGAHHASLLLSANYPEFGHINDFIKKGFSNQIGMILEPVSRGLGFTVLPAH
HHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCH
AVAAYPNPQLLKCHQLPVSVSETLYFAVRRQQVLPNRMQTVLNEVKKWL
HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MINITWLRTFCTLVEIGHFTHTAERLYMTQSGVSQHIRKLESQLEIDLLIRQGKQFSLTD
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCH
AGEHLYREAEDILQRLSRLEQRIGDDPYNEGLVRIMSPGSVGLKLYPKLLTLQEQHPQLV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEHHHHHHHHCCCCCEE
IDYRFAPNTDIEQALSKHEIDIGFMTTISDDETVSCKPVAQEALLLVTPVTMMEPSWEAL
EEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCEECCHHHHHHHHEECCHHHCCCCHHHH
TKLGFIDHPDGAHHASLLLSANYPEFGHINDFIKKGFSNQIGMILEPVSRGLGFTVLPAH
HHCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCH
AVAAYPNPQLLKCHQLPVSVSETLYFAVRRQQVLPNRMQTVLNEVKKWL
HHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]